Browse Element(s) Details


Os.9349.1.S1_at

Description gb:AK073389.1
DB_XREF= gi:32983412
TID=Os.9349.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043I15, full insert sequence.
FL= gb:AK073389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0691010/11coiled-coil protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed
LOC_Os11g06920OsAffx.22848.4.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06920OsAffx.22848.3.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06930OsAffx.30849.1.S1_at11/1111+3414707..3419882CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9349.1.S1_at--5--4351Chr11:3385635..3385659 (25 bp)
CCAGTGCTGCTGGAAAACTCGTGGA
LOC_Os11g06910
Os.9349.1.S1_at--906--5431Chr11:3385592..3385616 (25 bp)
GAACCTCGGTCGTCAGCTAAAATCG
LOC_Os11g06910
Os.9349.1.S1_at--94--5651Chr11:3385555..3385579 (25 bp)
GACAGTGTAACAGCCGAGCCTGAAA
LOC_Os11g06910
Os.9349.1.S1_at--144--1451Chr11:3385496..3385520 (25 bp)
AGAACCCGATGTTGAGGTGCCACCA
LOC_Os11g06910
Os.9349.1.S1_at--60--7791Chr11:3385481..3385505 (25 bp)
GGTGCCACCAGCAGGCTTTGCAAAT
LOC_Os11g06910
Os.9349.1.S1_at--10--1371Chr11:3385431..3385455 (25 bp)
AGAGCAATGGGAGCTGCCTGTCACC
LOC_Os11g06910
Os.9349.1.S1_at--387--5131Chr11:3385373..3385397 (25 bp)
GCAAACGTCAGTGTTCTCTGGCGGT
LOC_Os11g06910
Os.9349.1.S1_at--772--7871Chr11:3385351..3385375 (25 bp)
GGTTTATCGTCGCTTGGTAGCTACA
LOC_Os11g06910
Os.9349.1.S1_at--636--7511Chr11:3385263..3385287 (25 bp)
GTGGATGTTTGTCAGTTGTCACCTG
LOC_Os11g06910
Os.9349.1.S1_at--575--8871Chr11:3385207..3385231 (25 bp)
TGATGGTTACTTGTGCTTGTTCCGC
LOC_Os11g06910
Os.9349.1.S1_at--293--6711Chr11:3385189..3385213 (25 bp)
GTTCCGCCTGATGATTTTACTGCTA
NONE
Target Sequence 
CCAGTGCTGCTGGAAAACTCGTGGAGTGCCAGAAGACGATTGCGAACCTCGGTCGTCAGCTAAAATCGCTGACCGATCTC
GACAGTGTAACAGCCGAGCCTGAAAAGCTAGAGTCTGGGGATGCACTTCTGGACTTTAGAGAACCCGATGTTGAGGTGCC
ACCAGCAGGCTTTGCAAATGGCCTGTACGATTTGGATCTTCCAAAGAGCAATGGGAGCTGCCTGTCACCCATTCCTCGTG
TTCAGTCGTCTTCCACACATTCGCAAACGTCAGTGTTCTCTGGCGGTTTATCGTCGCTTGGTAGCTACAGGAACAAAACA
AGAAAGTGAAATCTGATGAAAAAGATTTGTGCATAAACTTATTTAACAGTTCGTGGATGTTTGTCAGTTGTCACCTGATG
CTTAGATCAGTGTACATTTACAGGAAAATGATGGTTACTTGTGCTTGTTCCGCCTGATGATTTTACTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis