Browse Element(s) Details


Os.23734.1.A1_at

Description gb:AK064208.1
DB_XREF= gi:32974226
TID=Os.23734.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E08, full insert sequence.
FL= gb:AK064208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0688011/11Long-chain-fatty-acid-CoA ligase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed
LOC_Os11g06920OsAffx.22848.4.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06920OsAffx.22848.3.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23734.1.A1_at--174--2151Chr11:3373440..3373464 (25 bp)
ACAGCTAAAGTTGCCGCTGCATTCT
LOC_Os11g06880
Os.23734.1.A1_at--262--2271Chr11:3373485..3373509 (25 bp)
AAATCAACAGCACGAGTTCTGTCTC
LOC_Os11g06880
Os.23734.1.A1_at--1128--6051Chr11:3373498..3373522 (25 bp)
GAGTTCTGTCTCGTGGCAATAACAA
LOC_Os11g06880
Os.23734.1.A1_at--592--5171Chr11:3373513..3373537 (25 bp)
GCAATAACAAAATTTTCTTTCCTAG
LOC_Os11g06880
Os.23734.1.A1_at--887--9531Chr11:3373528..3373552 (25 bp)
TCTTTCCTAGTTTCGAAACATCCAA
LOC_Os11g06880
Os.23734.1.A1_at--394--2431Chr11:3373552..3373576 (25 bp)
AAAACCACTGTTTTTGCAATGGCAT
LOC_Os11g06880
Os.23734.1.A1_at--1087--8991Chr11:3373566..3373590 (25 bp)
TGCAATGGCATCAGTGGGTAGCGAT
LOC_Os11g06880
Os.23734.1.A1_at--408--3151Chr11:3373655..3373679 (25 bp)
AATTCTGTGGTATTGGCCTTGTTTC
LOC_Os11g06880
Os.23734.1.A1_at--761--2111Chr11:3373684..3373708 (25 bp)
AAATTACCTGAGATTTTCTTAGCTC
LOC_Os11g06880
Os.23734.1.A1_at--638--6051Chr11:3373693..3373717 (25 bp)
GAGATTTTCTTAGCTCTTTGAGAGG
LOC_Os11g06880
Os.23734.1.A1_at--1068--4811Chr11:3373705..3373729 (25 bp)
GCTCTTTGAGAGGTTATCTGAGATT
LOC_Os11g06880
Target Sequence 
ACAGCTAAAGTTGCCGCTGCATTCTGNTTTTTNTGATACTGAAGAAAAATCAACAGCACGAGTTCTGTCTCGTGGCAATA
ACAAAATTTTCTTTCCTAGTTTCGAAACATCCAAAAACCACTGTTTTTGCAATGGCATCAGTGGGTAGCGATGAAACAGA
TGNAGGTCAATGCATTTGGAAGAAGCATTCCTGAAATGGGGAACAGGTAGATTTGGAATTCTGTGGTATTGGCCTTGTTT
CTTGTAAATTACCTGAGATTTTCTTAGCTCTTTGAGAGGTTATCTGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23734.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis