Browse Element(s) Details


Os.24716.1.A1_at

Description gb:CB653492
DB_XREF= gi:29657217
DB_XREF=OSJNEc04J06.f
CLONE=OSJNEc04J06
TID=Os.24716.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24716 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201214.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g068609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24716.1.A1_at--580--7111Chr11:3363657..3363681 (25 bp)
GTCATGAGCTTGTGCCACAGGCTAT
LOC_Os11g06860
Os.24716.1.A1_at--325--9311Chr11:3363625..3363649 (25 bp)
TCCCGTAGCTTGATCGAGCTCGACA
LOC_Os11g06860
Os.24716.1.A1_at--822--2351Chr11:3363600..3363624 (25 bp)
AAAGCGCACGCAAGGCTGCCAAGGA
LOC_Os11g06860
Os.24716.1.A1_at--475--6931Chr11:3363541..3363565 (25 bp)
GTAGGCACAGCTGGTAGCACCGCGT
LOC_Os11g06860
Os.24716.1.A1_at--167--5171Chr11:3363480..3363504 (25 bp)
GCAAGCAGCGGAAGCCTGATGTACT
LOC_Os11g06860
Os.24716.1.A1_at--1005--6271NONE
GATGTACTGCTCCTGTCGAAATGAT
NONE
Os.24716.1.A1_at--771--5331Chr11:3363352..3363376 (25 bp)
GAAGTCTACTAAACCTTGCAATGCG
LOC_Os11g06860
Os.24716.1.A1_at--779--591Chr11:3363332..3363356 (25 bp)
ATGCGTAAAGGTCGACTCTTGTGGC
LOC_Os11g06860
Os.24716.1.A1_at--866--7871Chr11:3363294..3363318 (25 bp)
GGTTTAGTATGTAGCCAGTTCTGTA
LOC_Os11g06860
Os.24716.1.A1_at--553--10051NONE
TAGTGTGCTACCTACTACTAGTAAT
NONE
Os.24716.1.A1_at--157--5691Chr11:3363122..3363146 (25 bp)
GACTTGTTTTATGCATTTCTTACCG
LOC_Os11g06860
Target Sequence 
GTCATGAGCTTGTGCCACAGGCTATCTTGGCNTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAG
GAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTC
CAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCGAAATGATTCTGATTGCATTACATCTTGT
AAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACC
TTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATC
TTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACA
TGGTGTAGTGTGCTACCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTTTTATGCATTTCTTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24716.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis