Browse Element(s) Details


Os.14121.1.S1_at

Description gb:AK106809.1
DB_XREF= gi:32992018
TID=Os.14121.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C08, full insert sequence.
FL= gb:AK106809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0690011/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed
LOC_Os11g06920OsAffx.22848.4.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06920OsAffx.22848.3.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14121.1.S1_at--871--7391Chr11:3379213..3379235 (23 bp)
GTGATCGTCACACCAATGACAGGAG
LOC_Os11g06900
Os.14121.1.S1_at--484--7371Chr11:3379092..3379116 (25 bp)
GTGACAGCGCACGAATTGCAGGACA
LOC_Os11g06900
Os.14121.1.S1_at--556--8111Chr11:3378927..3379069 (25 bp)
GGACTACATAAACGGAGCTGCGCTG
LOC_Os11g06900
Os.14121.1.S1_at--13--1611Chr11:3378912..3378936 (25 bp)
AGCTGCGCTGGTGAGGTACTCGATC
LOC_Os11g06900
Os.14121.1.S1_at--128--8891Chr11:3378901..3378925 (25 bp)
TGAGGTACTCGATCGCCGGGAACTT
LOC_Os11g06900
Os.14121.1.S1_at--505--371Chr11:3378860..3378884 (25 bp)
ATCACCGTGAAGGTTGGGTACGACA
LOC_Os11g06900
Os.14121.1.S1_at--735--8171Chr11:3378595..3378619 (25 bp)
GGAAGCCCATGGTGTACTACGATCT
LOC_Os11g06900
Os.14121.1.S1_at--952--411Chr11:3378450..3378474 (25 bp)
ATCATTCTTACCATCCCAAATACAG
LOC_Os11g06900
Os.14121.1.S1_at--1039--6671Chr11:3378380..3378404 (25 bp)
GTTGCTGCTGCTTGACATAAGCATG
LOC_Os11g06900
Os.14121.1.S1_at--180--9791Chr11:3378351..3378375 (25 bp)
TAAGTCATATGCATGTCGCTGTATA
LOC_Os11g06900
Os.14121.1.S1_at--1093--5252Chr12:8858436..8858455 (20 bp)
GAATGTGCCTACTGATTTACTAAAT
NONE
Target Sequence 
GTGATCGTCACACCAATGACAGGAGTGACAGCGCACGAATTGCAGGACAACGCGGGGCACACCGGNAGAGCTNNGGACTA
CATAAACGGAGCTGCGCTGGTGAGGTACTCGATCGCCGGGAACTTCCTGGGGTTGCCGGCGATCACCGTGAAGGTTGGGT
ACGACAGGGAAGGGCTCCCCGTCGGGCTGCAGTTCATCGGGAGGCCGTGGTCGGAGGCCACGCTGCTGCACCTCGCCTAC
GCCATGCAGGAGGCGTGCGGCAAGAACTACAGGAAGCCCATGGTGTACTACGATCTCCTCAACAAGAACNAATACTAGTT
TCAGTTTCAAAAGAACAAATAGTAGCTATATATGTTGTGAGAGTTGAGTGACAGTTTGATTCTGAGAGATTTGGACTGGG
GAGAAATTTATCATCGATCATTCTTACCATCCCAAATACAGAATGTGATGGACATTATTATTGTAATTGTTGTTATGTTT
GTTGTTGTTGCTGCTGCTTGACATAAGCATGCATGTAAGTCATATGCATGTCGCTGTATATGTTTACTATTATTGAATGT
GCCTACTGATTTACTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis