Browse Element(s) Details


Os.5512.1.S1_at

Description gb:U27098.1
DB_XREF= gi:857573
GEN=vatp-P1
TID=Os.5512.1
CNT=66
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.5512 (NCBI UniGene Cluster)
DEF=Oryza sativa vacuolar H+-ATPase (vatp-P1) mRNA, complete cds.
PROD=H+-ATPase
FL= gb:U27098.1 gb:AK121233.1 gb:AK105044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0689010/11Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed
LOC_Os11g06920OsAffx.22848.4.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06920OsAffx.22848.3.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0000220cellular_componenthydrogen-transporting ATPase V0 domain
GO:0016887molecular_functionATPase activity
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5512.1.S1_at--192--2931Chr11:3375459..3375483 (25 bp)
AAGGCTAAGCCGTACTACCTCTTTG
LOC_Os11g06890
Os.5512.1.S1_at--999--5151Chr11:3374386..3374410 (25 bp)
GCAACCAAAGCTTTTCGTGGGCATG
LOC_Os11g06890
Os.5512.1.S1_at--345--5051Chr11:3374343..3374367 (25 bp)
GCAGAAGCGCTTGCCCTGTATGGTC
LOC_Os11g06890
Os.5512.1.S1_at--717--10111Chr11:3374325..3374349 (25 bp)
TATGGTCTCATTGTGGGCATCATCC
LOC_Os11g06890
Os.5512.1.S1_at--337--9191Chr11:3374290..3374314 (25 bp)
TGCCGGCCAATCTCGTGCAGATTAG
LOC_Os11g06890
Os.5512.1.S1_at--876--6971Chr11:3374255..3374279 (25 bp)
GTACCATACCGCTGTTATTCCACTG
LOC_Os11g06890
Os.5512.1.S1_at--940--10211Chr11:3374240..3374264 (25 bp)
TATTCCACTGGCTATATTCTTGAGA
LOC_Os11g06890
Os.5512.1.S1_at--816--1751Chr11:3374213..3374237 (25 bp)
ACCTGAAACTTACTTGGGAGCTCTA
LOC_Os11g06890
Os.5512.1.S1_at--40--2851Chr11:3374156..3374180 (25 bp)
AAGGAAGGTGGCACTTCCAGTCCTT
LOC_Os11g06890
Os.5512.1.S1_at--846--8631NONE
TGGGTTAGGCTGGATTTTGCTGCTC
NONE
Os.5512.1.S1_at--105--4771Chr11:3374079..3374103 (25 bp)
GCTGCTCCTGAGCAAACGGATTTAA
LOC_Os11g06890
Target Sequence 
AAGGCTAAGCCGTACTACCTCTTTGACGGCTACGCGCATCTGTCGTCCGGGCTCGCCTGTGGCCTCGCCGGTCTCGCTGC
CGGAATGGCCATCGGCATCGTCGGTGATGCTGGTGTCAGGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCC
TCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTCTCATCCCGTGCCGGCCAATCT
CGTGCAGATTAGGCACTTTGCGGTACCATACCGCTGTTATTCCACTGGCTATATTCTTGAGAAAACCTGAAACTTACTTG
GGAGCTCTAGTTTAATGTATTAAAAGATCGATTTGTAGCTTAAGGAAGGTGGCACTTCCAGTCCTTTTTGTTTCTTTTGT
GGTGGTTCATGCAAAGTTTTTTGGGTTAGGCTGGATTTTGCTGCTCCTGAGCAAACGGATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis