Browse Element(s) Details


OsAffx.30978.1.S1_at

Description tigr:9639.m01370
TID=OsAffx.30978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1482011/11hypothetical protein
LOC_Os07g437001/11Malate dehydrogenase, glyoxysomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14770NANA11+8313890..8314404hypothetical protein
LOC_Os11g14780OsAffx.18868.1.S1_at1/1111+8314709..8315377expressed protein
LOC_Os11g14790NANA11+8321748..8323635retrotransposon, putative, centromere-specific
LOC_Os11g14800NANA11+8326222..8327269hypothetical protein
LOC_Os11g14810OsAffx.18868.2.A1_s_at11/1111+8328442..8331666hypothetical protein
LOC_Os11g14810OsAffx.18868.5.S1_x_at3/1111+8328442..8331666hypothetical protein
LOC_Os11g14810Os.46444.1.S1_x_at1/1111+8328442..8331666hypothetical protein
LOC_Os11g14820OsAffx.30978.1.S1_at11/1111+8337429..8337845hypothetical protein
LOC_Os11g14830Os.45212.1.S1_x_at2/1111+8339617..8341082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14840NANA11+8341968..8345057hypothetical protein
LOC_Os11g14850OsAffx.20823.2.S1_x_at1/1111+8351921..8353929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30978.1.S1_at--304--4251Chr11:8337756..8337780 (25 bp)
CCGGCGGCCTAGACCGGTAGAATCG
LOC_Os11g14820
OsAffx.30978.1.S1_at--198--8031Chr11:8337706..8337730 (25 bp)
GGAGGGAATCCAGTGACACCGGCCT
LOC_Os11g14820
OsAffx.30978.1.S1_at--215--8211Chr11:8337702..8337726 (25 bp)
GGAATCCAGTGACACCGGCCTTGGC
LOC_Os11g14820
OsAffx.30978.1.S1_at--919--9131Chr11:8337650..8337674 (25 bp)
TGCGTAGACGGATCGCTCGGGCAAC
LOC_Os11g14820
OsAffx.30978.1.S1_at--991--3931Chr11:8337623..8337647 (25 bp)
CGGTCCCCGGCCATAGAGGTGACGT
LOC_Os11g14820
OsAffx.30978.1.S1_at--234--3932Chr11:8389830..8390115 (25 bp)
CGGCCATAGAGGTGACGTCGTCGTC
NONE
OsAffx.30978.1.S1_at--79--5773Chr11:8390104..8390128 (25 bp)
GACGTCGTCGTCATTGAAGCGGAAG
NONE
OsAffx.30978.1.S1_at--919--9392Chr11:8390108..8390132 (25 bp)
TCGTCGTCATTGAAGCGGAAGCAGT
NONE
OsAffx.30978.1.S1_at--519--8211Chr11:8337555..8337579 (25 bp)
GGCAACCGGCGGTGATGAGGTCCCC
LOC_Os11g14820
OsAffx.30978.1.S1_at--601--5832Chr11:8390188..8390212 (25 bp)
GACCGGCGGTGCGATGGTGTCTGAG
NONE
OsAffx.30978.1.S1_at--608--3391Chr11:8337481..8337505 (25 bp)
CAGCGTGGCCGGCAGAGGAGTCAAG
LOC_Os11g14820
Target Sequence 
CCGGCGGCCTAGACCGGTAGAATCGGGGGCGTCATCGGGAGCAACGCGGCGGAGGGAATCCAGTGACACCGGCCTTGGCC
CTCGACGCGGTCGTCCCCCCGGCGGCTGCGTAGACGGATCGCTCGGGCAACGGCGGTCCCCGGCCATAGAGGTGACGTCG
TCGTCATTGAAGCGGAAGCAGTTGGGCGGTGGTGGCGGTCAGGCAACCGGCGGTGATGAGGTCCCCGGGGACAGGGTGAC
CGGCGGTGCGATGGTGTCTGAGGAGAGGCAGGGGTCAGCGTGGCCGGCAGAGGAGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis