Browse Element(s) Details


OsAffx.30980.1.S1_at

Description tigr:9639.m01374
TID=OsAffx.30980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1486011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14820OsAffx.30978.1.S1_at11/1111+8337429..8337845hypothetical protein
LOC_Os11g14830Os.45212.1.S1_x_at2/1111+8339617..8341082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14840NANA11+8341968..8345057hypothetical protein
LOC_Os11g14850OsAffx.20823.2.S1_x_at1/1111+8351921..8353929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30980.1.S1_at--359--7771Chr11:8358652..8358676 (25 bp)
GGTGACGGCTGCGTCGGCATGTCGA
LOC_Os11g14860
OsAffx.30980.1.S1_at--365--7191Chr11:8358664..8358688 (25 bp)
GTCGGCATGTCGAACGTGTCAGCAT
LOC_Os11g14860
OsAffx.30980.1.S1_at--1137--9431Chr11:8358665..8358689 (25 bp)
TCGGCATGTCGAACGTGTCAGCATG
LOC_Os11g14860
OsAffx.30980.1.S1_at--845--8271Chr11:8358667..8358691 (25 bp)
GGCATGTCGAACGTGTCAGCATGGC
LOC_Os11g14860
OsAffx.30980.1.S1_at--588--771Chr11:8358670..8358694 (25 bp)
ATGTCGAACGTGTCAGCATGGCGAC
LOC_Os11g14860
OsAffx.30980.1.S1_at--1002--4091Chr11:8358730..8358754 (25 bp)
CGACGGTGTGAAGACAGACGGCGGT
LOC_Os11g14860
OsAffx.30980.1.S1_at--314--4091Chr11:8358757..8358781 (25 bp)
CGACCGGCCAGATGAGATCGAGAGA
LOC_Os11g14860
OsAffx.30980.1.S1_at--741--1771Chr11:8358759..8358783 (25 bp)
ACCGGCCAGATGAGATCGAGAGAGA
LOC_Os11g14860
OsAffx.30980.1.S1_at--1061--3911Chr11:8358832..8358856 (25 bp)
CGGCGCGGTGCTCGGAACTAGGTGT
LOC_Os11g14860
OsAffx.30980.1.S1_at--1133--7291Chr11:8358839..8358863 (25 bp)
GTGCTCGGAACTAGGTGTAGCTGCT
LOC_Os11g14860
OsAffx.30980.1.S1_at--1094--9091Chr11:8358840..8358864 (25 bp)
TGCTCGGAACTAGGTGTAGCTGCTG
LOC_Os11g14860
Target Sequence 
GGTGACGGCTGCGTCGGCATGTCGAACGTGTCAGCATGGCGACGACGAATGCAGCAGCGGCGGCGGCGACGACGACGACG
ACGGTGTGAAGACAGACGGCGGTGGCGACCGGCCAGATGAGATCGAGAGAGATTGGAGAGGGAGGAGAGGTCGCGATGGG
GATCCGCCGCGCATCCAGGACGGCGCGGTGCTCGGAACTAGGTGTAGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis