Browse Element(s) Details


OsAffx.30993.1.S1_at

Description tigr:9639.m01435
TID=OsAffx.30993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1546011/11Ank repeat PF|00023 containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15430OsAffx.24844.1.S1_at1/1111+8736792..8740689transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15440OsAffx.448.1.S1_x_at1/1111+8746649..8750436retrotransposon protein, putative, unclassified
LOC_Os11g15450NANA11+8750710..8754780retrotransposon protein, putative, unclassified
LOC_Os11g15460OsAffx.30993.1.S1_at11/1111+8756938..8758306Ank repeat PF|00023 containing protein, putative
LOC_Os11g15470OsAffx.7119.1.S1_at11/1111+8759232..8759669hypothetical protein
LOC_Os11g15480NANA11+8761741..8762363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15490OsAffx.18864.1.S1_at11/1111+8771037..8771682hypothetical protein
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30993.1.S1_at--364--8031Chr11:8757706..8757730 (25 bp)
GGAGTCTTGTCCATGGCTGGCCAGA
LOC_Os11g15460
OsAffx.30993.1.S1_at--124--2751Chr11:8757680..8757704 (25 bp)
AAGAAAACGACTCTGGGCACACTCC
LOC_Os11g15460
OsAffx.30993.1.S1_at--1131--1931Chr11:8757564..8757588 (25 bp)
ACTGGAAAACCTCTGCTTGTCTCTG
LOC_Os11g15460
OsAffx.30993.1.S1_at--47--10811Chr11:8757548..8757572 (25 bp)
TTGTCTCTGCTGCATTTCAAGGCCA
LOC_Os11g15460
OsAffx.30993.1.S1_at--159--4431Chr11:8757527..8757551 (25 bp)
GCCATGTGAATGTTGCTCGAGAGCT
LOC_Os11g15460
OsAffx.30993.1.S1_at--1083--7971Chr11:8757487..8757511 (25 bp)
GGATGCTCCTTATTGCCAGGCAGAT
LOC_Os11g15460
OsAffx.30993.1.S1_at--297--931Chr11:8757470..8757494 (25 bp)
AGGCAGATCGGTGGACTTGTCTTCA
LOC_Os11g15460
OsAffx.30993.1.S1_at--452--7251Chr11:8757330..8757354 (25 bp)
GTCCGGAAGTGCAACCCCAAAATTG
LOC_Os11g15460
OsAffx.30993.1.S1_at--758--2451Chr11:8757312..8757336 (25 bp)
AAAATTGTGGCTGCTCTACTTCGCA
LOC_Os11g15460
OsAffx.30993.1.S1_at--288--2311Chr11:8757288..8757312 (25 bp)
AAAGGCGCTCGCATAGACTGCACAA
LOC_Os11g15460
OsAffx.30993.1.S1_at--910--2271Chr11:8757253..8757277 (25 bp)
AAATCGTGATCCAGCCATTTGGGAA
LOC_Os11g15460
Target Sequence 
GGAGTCTTGTCCATGGCTGGCCAGAGAAGAAAACGACTCTGGGCACACTCCAATGCAGATGGCTGTACGTTGGAACAAGG
CTGAAATGCTACAAGTATTGTTGGAACATGATTGGTCTTTAGGATACGCAAAGAACAGCAAGACTGGAAAACCTCTGCTT
GTCTCTGCTGCATTTCAAGGCCATGTGAATGTTGCTCGAGAGCTTCTCAGGCATTGTCCGGATGCTCCTTATTGCCAGGC
AGATCGGTGGACTTGTCTTCATGAAGCTATAGAGTTTGGCCATACTGAATTTGTTGAATTCATCCTGGGGGCACCACAAC
TTGGAAAATTAATTAACATGCGAGATGGAAAAGGAAAGACTGCTCTACATCACGCCGTCCGGAAGTGCAACCCCAAAATT
GTGGCTGCTCTACTTCGCAAAGGCGCTCGCATAGACTGCACAATGCTTGACCAAAATCGTGATCCAGCCATTTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis