Browse Element(s) Details


OsAffx.31037.1.S1_x_at

Description tigr:9639.m01677
TID=OsAffx.31037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1819411/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein
LOC_Os11g18170Os.49459.1.S1_at9/1111+10208348..10210791phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18220OsAffx.17052.2.S1_at11/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.17052.1.S1_at2/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.12861.2.S1_x_at1/1111+10248433..10249301hypothetical protein
LOC_Os11g18230OsAffx.18915.1.S1_at11/1111+10253690..10253968hypothetical protein
LOC_Os11g18240OsAffx.22699.1.S1_x_at2/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18240OsAffx.26189.1.S1_at1/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18250NANA11+10265313..10267321retrotransposon protein, putative, unclassified
LOC_Os11g18260OsAffx.940.1.S1_x_at2/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.31845.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.47114.1.S1_x_at1/1111+10268355..10271710hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31037.1.S1_x_at--62--7751Chr11:10241397..10241421 (25 bp)
GGTGGTGGCTCGTGGCAACGACCTC
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--117--8631Chr11:10241395..10241419 (25 bp)
TGGTGGCTCGTGGCAACGACCTCGA
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--488--4811Chr11:10241390..10241414 (25 bp)
GCTCGTGGCAACGACCTCGAGGATG
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--142--1751Chr11:10241377..10241401 (25 bp)
ACCTCGAGGATGACCCCGACAACGA
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--714--5611Chr11:10241360..10241384 (25 bp)
GACAACGACCTCGAAGATGACCTCG
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--1006--2571Chr11:10241357..10241381 (25 bp)
AACGACCTCGAAGATGACCTCGACG
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--549--8931Chr11:10241343..10241367 (25 bp)
TGACCTCGACGATGACCCTGATGAC
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--972--5831Chr11:10241342..10241366 (25 bp)
GACCTCGACGATGACCCTGATGACG
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--773--1751Chr11:10241341..10241365 (25 bp)
ACCTCGACGATGACCCTGATGACGA
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--64--5791Chr11:10241282..10241306 (25 bp)
GACGACGACCTAGATGACGACCCCG
LOC_Os11g18194
OsAffx.31037.1.S1_x_at--433--5831Chr11:10241234..10241258 (25 bp)
GACCTCGCGAGGAGTACACCAGCCG
LOC_Os11g18194
Target Sequence 
GGTGGTGGCTCGTGGCAACGACCTCGAGGATGACCCCGACAACGACCTCGAAGATGACCTCGACGATGACCCTGATGACG
ACGACGGCGCCCCCGACGACCTCGACAACGACCCCGACGACGACCTAGATGACGACCCCGACGACGACGACGGCGCCCAC
TCCGACCTCGCGAGGAGTACACCAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31037.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis