Browse Element(s) Details


OsAffx.31051.1.S1_at

Description tigr:9639.m01760
TID=OsAffx.31051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1897011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18961NANA11+10783652..10786984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18970OsAffx.31051.1.S1_at11/1111+10790591..10791272hypothetical protein
LOC_Os11g18980OsAffx.7151.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.56177.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.2.A1_at4/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.5.S1_x_at2/1111+10792812..10796566hypothetical protein
LOC_Os11g18990Os.50434.1.S1_at1/1111+10803308..10804956histidine triad family protein, putative
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31051.1.S1_at--948--9672Chr11:10790663..10790687 (25 bp)
TCACCTTCATCTGGCAGCGACGGAA
LOC_Os11g18970
OsAffx.31051.1.S1_at--807--4091Chr11:10790773..10790797 (25 bp)
CGACAGGCGCACTGGATTATTCCCA
LOC_Os11g18970
OsAffx.31051.1.S1_at--820--151Chr11:10790788..10790812 (25 bp)
ATTATTCCCAGCCTCGAGCGAGGCC
LOC_Os11g18970
OsAffx.31051.1.S1_at--1025--3571Chr11:10790812..10790836 (25 bp)
CATTCATGGCCTGCGTGAGGTGACG
LOC_Os11g18970
OsAffx.31051.1.S1_at--1116--6131Chr11:10791033..10791057 (25 bp)
GAGGTGACCAAGTCGACGATGCCAA
LOC_Os11g18970
OsAffx.31051.1.S1_at--253--231Chr11:10791084..10791108 (25 bp)
ATATTGGAGTTCAGCTGGGCGGATA
LOC_Os11g18970
OsAffx.31051.1.S1_at--510--1291Chr11:10791115..10791139 (25 bp)
AGATCCCTGGAGCTATTGCACCTGA
LOC_Os11g18970
OsAffx.31051.1.S1_at--242--6431Chr11:10791141..10791165 (25 bp)
GATCACGTTCCTGGACTAAAAATCC
LOC_Os11g18970
OsAffx.31051.1.S1_at--976--1371Chr11:10791175..10791199 (25 bp)
AGACCATGTTTTTCAAATTCAACGA
LOC_Os11g18970
OsAffx.31051.1.S1_at--180--5531Chr11:10791198..10791222 (25 bp)
GAAAACATCATTATCGTGAGCAAAG
LOC_Os11g18970
OsAffx.31051.1.S1_at--371--7371Chr11:10791213..10791237 (25 bp)
GTGAGCAAAGCGACCAACGGCAATA
LOC_Os11g18970
Target Sequence 
TCACCTTCATCTGGCAGCGACGGAAGGGGCTCGAATGGCGGCGGCGGCGGCGGCGGTAGTGGAAACCACCCCACGCCACA
GACCTCCAACGAGGCGGCCGCGTTTGCCTCCGACAGGCGCACTGGATTATTCCCAGCCTCGAGCGAGGCCATTCATGGCC
TGCGTGAGGTGACGGCGGCTATCGCGGGAGAAGATGAAACGAGCAAGGTGGGTGAGGGCTTCGGCGCCGAGGTGACCAAG
TCGACGATGCCAAAGTGTGGAGTCGGGAATGGCAAGGGCATATTGGAGTTCAGCTGGGCGGATAAGGTAGAGATCCCTGG
AGCTATTGCACCTGACGATCACGTTCCTGGACTAAAAATCCTTCACATCAAGACCATGTTTTTCAAATTCAACGAAAACA
TCATTATCGTGAGCAAAGCGACCAACGGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis