Browse Element(s) Details


OsAffx.31117.1.S1_at

Description tigr:9639.m02188
TID=OsAffx.31117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2472011/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein
LOC_Os11g24690OsAffx.7191.1.S1_at11/1111+13578949..13579826hypothetical protein
LOC_Os11g24700Os.51476.1.S1_x_at9/1111+13580659..13581140expressed protein
LOC_Os11g24710OsAffx.31116.1.S1_at11/1111+13581683..13581880NA
LOC_Os11g24720OsAffx.31117.1.S1_at11/1111+13584452..13586251ankyrin repeat family protein, putative
LOC_Os11g24730OsAffx.18995.1.S1_at11/1111+13591347..13592150protein kinase, putative
LOC_Os11g24740OsAffx.31118.1.S1_at11/1111+13596239..13596660hypothetical protein
LOC_Os11g24750OsAffx.31119.1.S1_at11/1111+13597207..13598520hypothetical protein
LOC_Os11g24760NANA11+13602464..13605469retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24770OsAffx.18996.1.S1_at10/1111+13609305..13611667hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31117.1.S1_at--615--4131Chr11:13585845..13585869 (25 bp)
CGCTCCATTTAGCTGTCGTTGTAGA
LOC_Os11g24720
OsAffx.31117.1.S1_at--313--6091Chr11:13585572..13585596 (25 bp)
GAGTCAGGAGCACAGTTTCAACCAC
LOC_Os11g24720
OsAffx.31117.1.S1_at--537--291Chr11:13585455..13585479 (25 bp)
ATAGCAACGATTGCCTTTGCCGCAG
LOC_Os11g24720
OsAffx.31117.1.S1_at--2--4531Chr11:13585437..13585461 (25 bp)
GCCGCAGCATTCAATGTTCCTGGAT
LOC_Os11g24720
OsAffx.31117.1.S1_at--483--2351Chr11:13585395..13585419 (25 bp)
AAAGCGAATCTAGCGGGTGACCCCA
LOC_Os11g24720
OsAffx.31117.1.S1_at--687--7711Chr11:13585381..13585405 (25 bp)
GGGTGACCCCATGTATAACGCTTTC
LOC_Os11g24720
OsAffx.31117.1.S1_at--583--9791Chr11:13585366..13585390 (25 bp)
TAACGCTTTCCTGATTCTAGACACC
LOC_Os11g24720
OsAffx.31117.1.S1_at--30--10031Chr11:13585349..13585373 (25 bp)
TAGACACCATCTCCATGGTTACTTC
LOC_Os11g24720
OsAffx.31117.1.S1_at--147--831Chr11:13585335..13585359 (25 bp)
ATGGTTACTTCAGTTGTGGCGACAA
LOC_Os11g24720
OsAffx.31117.1.S1_at--91--7551Chr11:13585131..13585344 (25 bp)
GTGGCGACAATACTGCTGCTTACAT
LOC_Os11g24720
OsAffx.31117.1.S1_at--1151--2071Chr11:13585110..13585134 (25 bp)
ACATTTTTAGCAATGCCAGGGTCAT
LOC_Os11g24720
Target Sequence 
CGCTCCATTTAGCTGTCGTTGTAGAGGAATGCAAGGTTGTTTCTAAGCTATTATCAAGTGGAGAGGTAAGTTTAGTAGTA
AAGTTGCATGAGTCAGGAGCACAGTTTCAACCACAAAGGCAAGATCTTATAGAGAAATGGAATGCTCAAGACATCATGAA
ATGGAGAGACAATACATCAAAAAATCTCGCTGTTGTTTCAACACTTATAGCAACGATTGCCTTTGCCGCAGCATTCAATG
TTCCTGGATCATATGGAGATGATGGGAAAGCGAATCTAGCGGGTGACCCCATGTATAACGCTTTCCTGATTCTAGACACC
ATCTCCATGGTTACTTCAGTTGTGGCGACAATACTGCTGCTTACATTTTTAGCAATGCCAGGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis