Browse Element(s) Details


Os.51476.1.S1_x_at

Description gb:AK062908.1
DB_XREF= gi:32972926
TID=Os.51476.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F12, full insert sequence.
FL= gb:AK062908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g247009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein
LOC_Os11g24690OsAffx.7191.1.S1_at11/1111+13578949..13579826hypothetical protein
LOC_Os11g24700Os.51476.1.S1_x_at9/1111+13580659..13581140expressed protein
LOC_Os11g24710OsAffx.31116.1.S1_at11/1111+13581683..13581880NA
LOC_Os11g24720OsAffx.31117.1.S1_at11/1111+13584452..13586251ankyrin repeat family protein, putative
LOC_Os11g24730OsAffx.18995.1.S1_at11/1111+13591347..13592150protein kinase, putative
LOC_Os11g24740OsAffx.31118.1.S1_at11/1111+13596239..13596660hypothetical protein
LOC_Os11g24750OsAffx.31119.1.S1_at11/1111+13597207..13598520hypothetical protein
LOC_Os11g24760NANA11+13602464..13605469retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51476.1.S1_x_at--1130--9471Chr11:13581072..13581096 (25 bp)
TCTCCCATGGGCAGCGTAGGCGGCG
LOC_Os11g24700
Os.51476.1.S1_x_at--912--10071Chr11:13581056..13581080 (25 bp)
TAGGCGGCGGTCTCCCACGGGCAGG
LOC_Os11g24700
Os.51476.1.S1_x_at--417--3391Chr11:13580924..13581011 (25 bp)
CAGCGACAGCGGCAGGAAGCGGTGG
LOC_Os11g24700
Os.51476.1.S1_x_at--617--5091Chr11:13580846..13580870 (25 bp)
GCACCCTACCTCCATTGGATCTGGA
LOC_Os11g24700
Os.51476.1.S1_x_at--900--3471Chr11:13580793..13580817 (25 bp)
CAGGAGGAGGTGGTGTCCCGGTGGC
LOC_Os11g24700
Os.51476.1.S1_x_at--219--8491Chr11:13580760..13580784 (25 bp)
TGGCAGTGGTGGAGCCCTCCTCTGA
LOC_Os11g24700
Os.51476.1.S1_x_at--719--5871Chr11:13580749..13580773 (25 bp)
GAGCCCTCCTCTGAATTTTGTGAAA
LOC_Os11g24700
Os.51476.1.S1_x_at--826--6531Chr11:13580706..13580730 (25 bp)
GATTTTAGTGATGCTTTTCAATGTT
LOC_Os11g24700
Os.51476.1.S1_x_at--1099--3191Chr11:13580688..13580712 (25 bp)
CAATGTTTATTGTTCTGTGATTTGT
LOC_Os11g24700
Os.51476.1.S1_x_at--261--6611Chr11:13580654..13580678 (25 bp)
GATTGGGATTGATTCTAGTGATGTT
NONE
Os.51476.1.S1_x_at--668--6571Chr11:13580644..13580668 (25 bp)
GATTCTAGTGATGTTAGTGATGTTT
NONE
Target Sequence 
TCTCCCATGGGCAGCGTAGGCGGCGGTCTCCCACGGGCAGGAACGCGCGGCAGCGGGAGGGAGGCGACAGCTGCGGTGGC
AGCTGCAGCGACAGCGGCAGGAAGCGGTGGTGGCCCGGCGGCGGGACGGCGGTGGTGGTCCGGCGGCGGGACGAGAGGCG
GCGGCACCCTACCTCCATTGGATCTGGAGGGAGGGCATGCGGCGGCGGCTCGACGGCAGGAGGAGGTGGTGTCCCGGTGG
CGGAAGGAGTGGCAGTGGTGGAGCCCTCCTCTGAATTTTGTGAAAGATTCAATGTTAGTGAAAGATTTTAGTGATGCTTT
TCAATGTTTATTGTTCTGTGATTTGTTTGATTGGGGATTGGGATTGATTCTAGTGATGTTAGTGATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51476.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis