Browse Element(s) Details


OsAffx.18994.1.S1_at

Description tigr:9639.m02180
TID=OsAffx.18994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2464010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein
LOC_Os11g24690OsAffx.7191.1.S1_at11/1111+13578949..13579826hypothetical protein
LOC_Os11g24700Os.51476.1.S1_x_at9/1111+13580659..13581140expressed protein
LOC_Os11g24710OsAffx.31116.1.S1_at11/1111+13581683..13581880NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18994.1.S1_at--451--3651NONE
CTTCGGTGGGATTCCGCAGTTGCAA
NONE
OsAffx.18994.1.S1_at--514--451Chr11:13555648..13555672 (25 bp)
ATCTCTTAGGCCGTTGTATTCGTTT
LOC_Os11g24640
OsAffx.18994.1.S1_at--608--10091Chr11:13555642..13555666 (25 bp)
TAGGCCGTTGTATTCGTTTACTTAT
LOC_Os11g24640
OsAffx.18994.1.S1_at--403--6831Chr11:13555627..13555651 (25 bp)
GTTTACTTATATAGTTCGCGCCAAC
LOC_Os11g24640
OsAffx.18994.1.S1_at--384--6711Chr11:13555614..13555638 (25 bp)
GTTCGCGCCAACACAATTCTGGCAC
LOC_Os11g24640
OsAffx.18994.1.S1_at--4--3312Chr11:13555603..13555627 (25 bp)
CACAATTCTGGCACCATCAGCCAAG
LOC_Os11g24640
OsAffx.18994.1.S1_at--556--10351Chr11:13555572..13555596 (25 bp)
TTTTTCATCAACAGCGGGGTACGGG
LOC_Os11g24640
OsAffx.18994.1.S1_at--621--7511Chr11:13555547..13555571 (25 bp)
GTGGACCGGAGATTGCGGCAGCAGT
LOC_Os11g24640
OsAffx.18994.1.S1_at--649--71Chr11:13555536..13555560 (25 bp)
ATTGCGGCAGCAGTGGTTGCGGCAT
LOC_Os11g24640
OsAffx.18994.1.S1_at--425--1091Chr11:13555525..13555549 (25 bp)
AGTGGTTGCGGCATCCGACGCCAAC
LOC_Os11g24640
OsAffx.18994.1.S1_at--44--4411Chr11:13555468..13555492 (25 bp)
GCCCCACCTGTCAGTAACCAGGAAA
LOC_Os11g24640
Target Sequence 
CTTCGGTGGGATTCCGCAGTTGCAAGATCAAACTGACTGGCATGCCCGCATCTCATCAACCTTTGGACCTGCACTAAAGT
TAAGCAGATCTCTTAGGCCGTTGTATTCGTTTACTTATATAGTTCGCGCCAACACAATTCTGGCACCATCAGCCAAGCGC
GAATTTTTCATCAACAGCGGGGTACGGGGTGGACCGGAGATTGCGGCAGCAGTGGTTGCGGCATCCGACGCCAACGGCTG
GAGGAAGGGGACGGGCCCGATAGATGGGCCCCACCTGTCAGTAACCAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis