Browse Element(s) Details


Os.53661.1.S1_at

Description gb:AK111457.1
DB_XREF= gi:32996666
TID=Os.53661.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C07, full insert sequence.
FL= gb:AK111457.1 gb:AK073814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2463010/11HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53661.1.S1_at--925--4231NONE
CCGTTCCAGTGTGATCGTCTGCCAA
NONE
Os.53661.1.S1_at--907--8271Chr11:13548385..13548409 (25 bp)
GGCTACTGGCTAGTTAATACTAGTC
LOC_Os11g24630
Os.53661.1.S1_at--810--1191Chr11:13548374..13548398 (25 bp)
AGTTAATACTAGTCTGGGAGGACTT
LOC_Os11g24630
Os.53661.1.S1_at--79--7191Chr11:13548363..13548387 (25 bp)
GTCTGGGAGGACTTATGTATGCTCA
LOC_Os11g24630
Os.53661.1.S1_at--654--7651Chr11:13548359..13548383 (25 bp)
GGGAGGACTTATGTATGCTCATGTA
LOC_Os11g24630
Os.53661.1.S1_at--1103--8111Chr11:13548355..13548379 (25 bp)
GGACTTATGTATGCTCATGTATTAT
LOC_Os11g24630
Os.53661.1.S1_at--607--4811Chr11:13548343..13548367 (25 bp)
GCTCATGTATTATATACTCCTTTGG
LOC_Os11g24630
Os.53661.1.S1_at--26--6891Chr11:13548337..13548361 (25 bp)
GTATTATATACTCCTTTGGAGCACG
LOC_Os11g24630
Os.53661.1.S1_at--107--1811Chr11:13548328..13548352 (25 bp)
ACTCCTTTGGAGCACGTACTTTAAT
LOC_Os11g24630
Os.53661.1.S1_at--174--4311Chr11:13548325..13548349 (25 bp)
CCTTTGGAGCACGTACTTTAATATA
LOC_Os11g24630
Os.53661.1.S1_at--265--8072Chr07:19242124..19242192 (25 bp)
GGAGCACGTACTTTAATATAATTTT
NONE
Target Sequence 
CCGTTCCAGTGTGATCGTCTGCCAAAAGATGAACCCCCTTATCTTTATCCACAAGCTAGAGGTATACTGAAAGCACTTAA
GGATAGGGGAATTGAGATGGCCATTGCTTCTCGAGCATCCAGGAAGAAAGGTGTTGCAAAAGCATTTCTGGAAAAACTTG
GCATTCACTTCATGTTTGGGGCTCAGGAAATATTCTACACTTGGAGTCCAAAGAATGAGCATTTCCAGAGTATCCATCGG
AAGACAGGTGTACCTTTCAAGTCTATGCTTTTCTTTGATGATGAGGCCAGAAATATTATAGCAACAAGGAAATTGGGGGT
CAGTTGTGTGCTTGTGGATACTGGTATAACTCTGGAGAAGTTAAGAACTGGACTAAGCAACTATGCTAATAGATCAGCAT
CACCAAATGCAGAGCCGGCGGGCGGGCGAAGTGCTGAGATTACGTGGTATTTAGATGTGGCTACTGGCTAGTTAATACTA
GTCTGGGAGGACTTATGTATGCTCATGTATTATATACTCCTTTGGAGCACGTACTTTAATATAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis