Browse Element(s) Details


Os.15985.1.S1_at

Description gb:AK064185.1
DB_XREF= gi:32974203
TID=Os.15985.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B11, full insert sequence.
FL= gb:AK064185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2457011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed
LOC_Os11g24550OsAffx.31110.1.S1_at11/1111+13508561..13509685BTB/POZ domain containing protein
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15985.1.S1_at--1--8271Chr11:13529136..13529160 (25 bp)
GGCTAGAGCGGAGGCTTTAGCTAAA
LOC_Os11g24570
Os.15985.1.S1_at--1090--9191Chr11:13529211..13529235 (25 bp)
TGCCAGGGCTAGTCGAGCAGCAATT
LOC_Os11g24570
Os.15985.1.S1_at--1098--6211Chr11:13529296..13529320 (25 bp)
GAGGCGCAGGTTGTTGAGTCCCATA
LOC_Os11g24570
Os.15985.1.S1_at--241--6651Chr11:13529308..13529332 (25 bp)
GTTGAGTCCCATAGTGACACCAATG
LOC_Os11g24570
Os.15985.1.S1_at--128--10091Chr11:13529389..13529413 (25 bp)
TAGGTCAGACCTTTGTTTCGTTGTT
LOC_Os11g24570
Os.15985.1.S1_at--212--6851Chr11:13529403..13529427 (25 bp)
GTTTCGTTGTTCTATTCTCAGTTAA
LOC_Os11g24570
Os.15985.1.S1_at--750--4851Chr11:13529520..13529544 (25 bp)
GCTACTGATTGTATGCTGGAATCTT
LOC_Os11g24570
Os.15985.1.S1_at--986--4711Chr11:13529534..13529558 (25 bp)
GCTGGAATCTTATGTGCCACATCGG
LOC_Os11g24570
Os.15985.1.S1_at--1057--7271Chr11:13529547..13529571 (25 bp)
GTGCCACATCGGTCATTTGGAGATA
LOC_Os11g24570
Os.15985.1.S1_at--291--231Chr11:13529581..13529605 (25 bp)
ATATATTTTTATCCCTATGACTGCT
LOC_Os11g24570
Os.15985.1.S1_at--848--5211Chr11:13529607..13529631 (25 bp)
GAATTTAAATTACTAGTCCTGCTTA
LOC_Os11g24570
Target Sequence 
GGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGAGGCAAAGGCCAAGGAGGAAGCTGCTGCCA
GGGCTAGTCGAGCAGCAATTGAGNCAGTGCTTGGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAG
GAGGCGCAGGTTGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAGNAATCTGG
TGATGCNTTGCCATAGGTCAGACCTTTGTTTCGTTGTTCTATTCTCAGTTAATGGTTAGTTTTGTTTCAATAGTAGAATT
CTATTTTAAGAGAGTATCTAGTAGATGGTTNACTTGATAATTTGAATGGAAAGTTATTCAANTTGCTACTGATTGTATGC
TGGAATCTTATGTGCCACATCGGTCATTTGGAGATAATCAGATAAATATATTTTTATCCCTATGACTGCTAGAATTTAAA
TTACTAGTCCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis