Browse Element(s) Details


OsAffx.31112.1.S1_at

Description tigr:9639.m02179
TID=OsAffx.31112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=haloacid dehalogenase-like hydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g246309/11HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31112.1.S1_at--225--7471Chr11:13551515..13551539 (25 bp)
GTGTGTGGGTATTAGAAAACTTTCT
LOC_Os11g24630
OsAffx.31112.1.S1_at--466--1431Chr11:13551460..13551526 (25 bp)
AGAAAACTTTCTGGCTAGTCTTTTG
LOC_Os11g24630
OsAffx.31112.1.S1_at--1136--9551Chr11:13551442..13551466 (25 bp)
TCTTTTGGTTTTCCACATTCAGCAA
LOC_Os11g24630
OsAffx.31112.1.S1_at--593--10291Chr11:13551433..13551457 (25 bp)
TTTCCACATTCAGCAAACGGGCAAT
LOC_Os11g24630
OsAffx.31112.1.S1_at--694--3411Chr11:13551423..13551447 (25 bp)
CAGCAAACGGGCAATGGGACAGTCA
LOC_Os11g24630
OsAffx.31112.1.S1_at--172--3211Chr11:13551412..13551436 (25 bp)
CAATGGGACAGTCATTCGGGCAACT
LOC_Os11g24630
OsAffx.31112.1.S1_at--971--7131Chr11:13551402..13551426 (25 bp)
GTCATTCGGGCAACTGGTATAATTT
LOC_Os11g24630
OsAffx.31112.1.S1_at--1055--7851Chr11:13551387..13551411 (25 bp)
GGTATAATTTCAGCAGCCATCGAAA
LOC_Os11g24630
OsAffx.31112.1.S1_at--386--5071Chr11:13551375..13551399 (25 bp)
GCAGCCATCGAAATGATTGTGAAAT
LOC_Os11g24630
OsAffx.31112.1.S1_at--269--10831NONE
TTGTGAAATTCTTGGGTGATCGTCT
NONE
OsAffx.31112.1.S1_at--46--2251NONE
AAATTCTTGGGTGATCGTCTGCCAA
NONE
Target Sequence 
GTGTGTGGGTATTAGAAAACTTTCTGGCTAGTCTTTTGGTTTTCCACATTCAGCAAACGGGCAATGGGACAGTCATTCGG
GCAACTGGTATAATTTCAGCAGCCATCGAAATGATTGTGAAATTCTTGGGTGATCGTCTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis