Browse Element(s) Details


Os.57446.1.S1_x_at

Description gb:D29724.1
DB_XREF= gi:474001
TID=Os.57446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57446 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein L38 gene
DEF=Rice mRNA, partial homologous to ribosomal protein L38 gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g246103/1160S ribosomal protein L38, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57446.1.S1_x_at--366--10692Chr11:13544028..13544144 (25 bp)
TTCCACCATGCCGAAGCAGATCCAC
NONE
Os.57446.1.S1_x_at--697--372Chr11:13544148..13544172 (25 bp)
ATCAAGGACTTCCTCCTGACGGCGA
LOC_Os11g24610
Os.57446.1.S1_x_at--473--2912Chr11:13544151..13544175 (25 bp)
AAGGACTTCCTCCTGACGGCGAGGA
LOC_Os11g24610
Os.57446.1.S1_x_at--305--5692Chr11:13544154..13544178 (25 bp)
GACTTCCTCCTGACGGCGAGGAGGA
LOC_Os11g24610
Os.57446.1.S1_x_at--903--951NONE
AGGACGACGTCAAGTTCAAGGTGCG
NONE
Os.57446.1.S1_x_at--193--7092Chr05:24969913..24969937 (25 bp)
GTCAAGTTCAAGGTGCGCTGCTCCA
NONE
Os.57446.1.S1_x_at--164--3231Chr07:21672135..21672159 (25 bp)
CAAGTTCAAGGTGCGCTGCTCCAAG
NONE
Os.57446.1.S1_x_at--12--6771Chr07:21672132..21672156 (25 bp)
GTTCAAGGTGCGCTGCTCCAAGTAC
NONE
Os.57446.1.S1_x_at--921--2891Chr07:21672128..21672152 (25 bp)
AAGGTGCGCTGCTCCAAGTACCTCT
NONE
Os.57446.1.S1_x_at--771--7291Chr07:21672125..21672149 (25 bp)
GTGCGCTGCTCCAAGTACCTCTACA
NONE
Os.57446.1.S1_x_at--270--3892Chr11:13545178..13545201 (24 bp)
CTGTCCAGGAGGTTTAAGCATCAAA
NONE
Target Sequence 
TTCCACCATGCCGAAGCAGATCCACGANATCAAGGACTTCCTCCTGACGGCGAGGAGGAAGGACGNNAGGTCGGTGCGGA
TCAANAGGNCCAAGGACGACGTCAAGTTCAAGGTGCGCTGCTCCAAGTACCTCTACACCCTCTGCNTCTTCNACGCAGAC
AAGGCCANCAAGCTCAAGCAGTCGNTTCCCCCGGGTTTANCTGTCCAGGAGGTTTAAGCATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57446.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis