Browse Element(s) Details


OsAffx.31114.1.S1_at

Description tigr:9639.m02183
TID=OsAffx.31114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein
LOC_Os11g24690OsAffx.7191.1.S1_at11/1111+13578949..13579826hypothetical protein
LOC_Os11g24700Os.51476.1.S1_x_at9/1111+13580659..13581140expressed protein
LOC_Os11g24710OsAffx.31116.1.S1_at11/1111+13581683..13581880NA
LOC_Os11g24720OsAffx.31117.1.S1_at11/1111+13584452..13586251ankyrin repeat family protein, putative
LOC_Os11g24730OsAffx.18995.1.S1_at11/1111+13591347..13592150protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31114.1.S1_at--705--6911Chr11:13570342..13570366 (25 bp)
GTATGCCTCAGGAGCACAGTTCCAG
LOC_Os11g24670
OsAffx.31114.1.S1_at--745--8771Chr11:13570234..13570258 (25 bp)
TGTTTCGACACTTGTGGCAACGGTC
LOC_Os11g24670
OsAffx.31114.1.S1_at--80--9051Chr11:13570201..13570225 (25 bp)
TGCAGCTTTCAACATTCCTGGGTCA
LOC_Os11g24670
OsAffx.31114.1.S1_at--633--671Chr11:13570133..13570157 (25 bp)
ATGACACTTTTCTGATCCTTGACAC
LOC_Os11g24670
OsAffx.31114.1.S1_at--184--2171Chr11:13570112..13570136 (25 bp)
ACACCATCTCATTAGTCACTTCAGT
LOC_Os11g24670
OsAffx.31114.1.S1_at--782--631Chr11:13570036..13570101 (25 bp)
ATGCTACTGCTTCATGATCTCAACG
LOC_Os11g24670
OsAffx.31114.1.S1_at--990--9711Chr11:13570017..13570041 (25 bp)
TCAACGCACTTTCTATGGCTGTCAA
LOC_Os11g24670
OsAffx.31114.1.S1_at--217--831Chr11:13569984..13570008 (25 bp)
ATGGTATTAGGCTTCTTGGCAGCTA
LOC_Os11g24670
OsAffx.31114.1.S1_at--828--2951Chr11:13569919..13569943 (25 bp)
AATGGCCATCCTGATTTATTTCGGG
LOC_Os11g24670
OsAffx.31114.1.S1_at--998--5331Chr11:13569832..13569856 (25 bp)
GAAGTTCCTATTCGGAGGTCGCATG
LOC_Os11g24670
OsAffx.31114.1.S1_at--394--10151Chr11:13569768..13569792 (25 bp)
TATCCCTACGCGATCTTTTACACTT
LOC_Os11g24670
Target Sequence 
GTATGCCTCAGGAGCACAGTTCCAGCCACAGAGGCAAGATCATATAGAGAAGTGGAATGCTCAGGACATCATGAAATGGC
GAGATACTACATCAAAATATCTTGCTATTGTTTCGACACTTGTGGCAACGGTCGCCTTTTCTGCAGCTTTCAACATTCCT
GGGTCATATGGAGATGATGGAAAAGCGAATCTAGCAGGGAATTGCATGTATGACACTTTTCTGATCCTTGACACCATCTC
ATTAGTCACTTCAGTCGTGGCGATAATGCTACTGCTTCATGATCTCAACGCACTTTCTATGGCTGTCAATAAACACCATG
GTATTAGGCTTCTTGGCAGCTATATCTGCAGTGATGAGCAAGAAGAAGGGCTTAAACATTACAATGGCCATCCTGATTTA
TTTCGGGATGTGGATATTAACGATGCTGCTTACAAGCTTAACGACAGTAGGGTCATTTACAGGCATTCTGAAGTTCCTAT
TCGGAGGTCGCATGGAAAGACAGCGGCGAGCGAAGAGGCGCATCAGCCGGCAGTATCCCTACGCGATCTTTTACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis