Browse Element(s) Details


Os.54333.1.S1_at

Description gb:AK103436.1
DB_XREF= gi:32988645
TID=Os.54333.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129C03, full insert sequence.
FL= gb:AK103436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2459010/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54333.1.S1_at--504--9571Chr11:13541147..13541171 (25 bp)
TCTTGTTTTGACTCGGATGAAATCT
LOC_Os11g24590
Os.54333.1.S1_at--970--8951Chr11:13541164..13541188 (25 bp)
TGAAATCTTAGGGACACTGGCTGTT
LOC_Os11g24590
Os.54333.1.S1_at--798--5631Chr11:13541176..13541200 (25 bp)
GACACTGGCTGTTCTTTTATCAGAT
LOC_Os11g24590
Os.54333.1.S1_at--443--7291Chr11:13541210..13541234 (25 bp)
GTGCCTGCTGGCTGTTATGCTGAAG
LOC_Os11g24590
Os.54333.1.S1_at--819--8771Chr11:13541254..13541278 (25 bp)
TGTTTGTGCTCAACCAACACATGCA
LOC_Os11g24590
Os.54333.1.S1_at--364--2451NONE
AACAATCAATCCTCCTGTATGGTTA
NONE
Os.54333.1.S1_at--591--4531Chr11:13541980..13542004 (25 bp)
GCACCTTTGAGGTTACTGTAAGCCA
LOC_Os11g24590
Os.54333.1.S1_at--350--3411Chr11:13542019..13542043 (25 bp)
CAGAATCTCAAACAGTGTCCCGCTG
LOC_Os11g24590
Os.54333.1.S1_at--728--9331Chr11:13542110..13542134 (25 bp)
TCGCTACTATTCCAACTTGCTGGTA
LOC_Os11g24590
Os.54333.1.S1_at--984--2771Chr11:13542136..13542160 (25 bp)
AAGAGCTAGCTCTGTGCTGCTATGT
LOC_Os11g24590
Os.54333.1.S1_at--6--9091Chr11:13542153..13542177 (25 bp)
TGCTATGTTCTGTTCCAACTGTGGA
LOC_Os11g24590
Target Sequence 
TCTTGTTTTGACTCGGATGAAATCTTAGGGACACTGGCTGTTCTTTTATCAGATATCAACACTGTGCCTGCTGGCTGTTA
TGCTGAAGTGGTACGGAGAAATGCTTCTGTTTGTGCTCAACCAACACATGCACAACTTAGAAGGGACTTAATGGNGCATA
TTTGGCAGCGTTTTGGTCCATTTGGCAACAAGTAAAACAATCAATCCTCCTGTATGGTTATGTTAAAAGCCTAAGCACCT
TTGAGGTTACTGTAAGCCAACATTTTGGAAAGCCAGAATCTCAAACAGTGTCCCGCTGGATTACTTGGGATATTGGACTT
CCAACATAACCAATGATGTGGTTCTATTGTTCCCTTTGTCCGACTCGCTACTATTCCAACTTGCTGGTACAAGAGCTAGC
TCTGTGCTGCTATGTTCTGTTCCAACTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis