Browse Element(s) Details


Os.6807.1.S1_at

Description gb:AK067849.1
DB_XREF= gi:32977867
TID=Os.6807.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122G04, full insert sequence.
FL= gb:AK067849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2456010/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed
LOC_Os11g24550OsAffx.31110.1.S1_at11/1111+13508561..13509685BTB/POZ domain containing protein
LOC_Os11g24560Os.6807.1.S1_at10/1111+13514550..13522201Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os11g24570Os.15985.1.S1_at11/1111+13527406..13529637pentatricopeptide, putative, expressed
LOC_Os11g24580Os.47130.4.A1_x_at2/1111+13531520..13531843retrotransposon protein, putative, unclassified
LOC_Os11g24600OsAffx.18993.1.S1_at11/1111+13538090..13538740hypothetical protein
LOC_Os11g24590Os.54333.1.S1_at10/1111+13538645..13542240transposon protein, putative, Pong sub-class, expressed
LOC_Os11g24610Os.57446.1.S1_x_at3/1111+13544035..1354519460S ribosomal protein L38, putative, expressed
LOC_Os11g24620OsAffx.31111.1.S1_x_at11/1111+13546406..13547059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6807.1.S1_at--550--3171Chr11:13520941..13520965 (25 bp)
AATTGTTGCAAGCTCCTCACGAGGA
LOC_Os11g24560
Os.6807.1.S1_at--590--6531Chr11:13520989..13521013 (25 bp)
GATTTCCTGCTCCAAGACTAGTTGT
LOC_Os11g24560
Os.6807.1.S1_at--832--6631Chr11:13521009..13521033 (25 bp)
GTTGTCTGTGACCAACATGGCTCAC
LOC_Os11g24560
Os.6807.1.S1_at--736--2111NONE
ACATGGCTCACAGGCAAGGTTCTTG
NONE
Os.6807.1.S1_at--736--8971Chr11:13521785..13521809 (25 bp)
TGAACCCATCGGCTACATATAACTC
LOC_Os11g24560
Os.6807.1.S1_at--1130--6691Chr11:13521820..13521844 (25 bp)
GTTCCTCCAGGTTCTGACATCATAT
LOC_Os11g24560
Os.6807.1.S1_at--833--6291Chr11:13521850..13521874 (25 bp)
GATGATGTTAGTTTCCAGGTCTTCT
LOC_Os11g24560
Os.6807.1.S1_at--601--3471Chr11:13521865..13521889 (25 bp)
CAGGTCTTCTGTGAGCATCTTCAAA
LOC_Os11g24560
Os.6807.1.S1_at--251--2951Chr11:13521888..13521912 (25 bp)
AAGGCTGGCCGTTCAGTCCTAAGGA
LOC_Os11g24560
Os.6807.1.S1_at--353--1251Chr11:13521924..13521948 (25 bp)
AGTTGTACACCGTATCTGATAGCTA
LOC_Os11g24560
Os.6807.1.S1_at--954--9631Chr11:13522032..13522056 (25 bp)
TCAGGTTTTCCGACATCAGACAATT
LOC_Os11g24560
Target Sequence 
AATTGTTGCAAGCTCCTCACGAGGAGGCTCAAATAATAATTAAAGGACGATTTCCTGCTCCAAGACTAGTTGTCTGTGAC
CAACATGGCTCACAGGCAAGGTTCTTGTTGGCAAAGCTGAACCCATCGGCTACATATAACTCAGCACATGATGTTCCTCC
AGGTTCTGACATCATATTCACGGATGATGTTAGTTTCCAGGTCTTCTGTGAGCATCTTCAAAGGCTGGCCGTTCAGTCCT
AAGGACATGTATGCAAAGTTGTACACCGTATCTGATAGCTATATTTACTGAGTTTGGTAGGTCTGAGTTGTGGGAGATTT
CNGCTTTCCCTTTTTTTGACCTCANTGTGTTCTTATTACATCGTGTCAGGTTTTCCGACATCAGACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis