Browse Element(s) Details


OsAffx.31141.1.S1_at

Description tigr:9639.m02374
TID=OsAffx.31141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2662011/11hypothetical protein
LOC_Os01g030402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26590NANA11+14729109..14729926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g26600OsAffx.7210.1.S1_at11/1111+14743716..14744404hypothetical protein
LOC_Os11g26620OsAffx.31141.1.S1_at11/1111+14753110..14756689hypothetical protein
LOC_Os11g26630OsAffx.30665.1.A1_x_at1/1111+14760124..14760504hypothetical protein
LOC_Os11g26630OsAffx.24317.2.S1_x_at1/1111+14760124..14760504hypothetical protein
LOC_Os11g26640OsAffx.24317.2.S1_x_at5/1111+14761349..14761775hypothetical protein
LOC_Os11g26650NANA11+14763111..14767615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26660OsAffx.24317.2.S1_x_at2/1111+14768263..14768643hypothetical protein
LOC_Os11g26660OsAffx.30665.1.A1_x_at1/1111+14768263..14768643hypothetical protein
LOC_Os11g26670NANA11+14773754..14779883retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31141.1.S1_at--879--2071Chr11:14755240..14755260 (21 bp)
ACATCAAGTTACACACAAGAGATTG
LOC_Os11g26620
OsAffx.31141.1.S1_at--298--2191Chr11:14755250..14755538 (25 bp)
ACACACAAGAGATTGAAGTGCTCAA
LOC_Os11g26620
OsAffx.31141.1.S1_at--900--7318Chr11:16422922..16422946 (25 bp)
GTGAGGAACAAACTCACCAAGTTTG
NONE
OsAffx.31141.1.S1_at--33--3377Chr11:14755554..14755578 (25 bp)
CACCAAGTTTGGTGCCAATCCAACC
LOC_Os11g26620
OsAffx.31141.1.S1_at--264--3014Chr11:14755570..14755594 (25 bp)
AATCCAACCACGTTTGAGCCTCCAA
LOC_Os11g26620
OsAffx.31141.1.S1_at--264--10271Chr11:14755582..14755606 (25 bp)
TTTGAGCCTCCAAACGCTGGCTTGA
LOC_Os11g26620
OsAffx.31141.1.S1_at--364--4471Chr11:14755587..14755611 (25 bp)
GCCTCCAAACGCTGGCTTGATGAAG
LOC_Os11g26620
OsAffx.31141.1.S1_at--821--4371Chr11:14755591..14755615 (25 bp)
CCAAACGCTGGCTTGATGAAGATCG
LOC_Os11g26620
OsAffx.31141.1.S1_at--179--9131Chr11:14755990..14756014 (25 bp)
TGCTGTCCTTTCTCCCGCCGGATTT
LOC_Os11g26620
OsAffx.31141.1.S1_at--23--4231Chr11:14756078..14756102 (25 bp)
CCGCTACAGCGGAAGGGACTGCGCT
LOC_Os11g26620
OsAffx.31141.1.S1_at--901--5791Chr11:14756192..14756216 (25 bp)
GACGCACGCTGCTAACGACGCCGAC
LOC_Os11g26620
Target Sequence 
ACATCAAGTTACACACAAGAGATTGAAGTGCTCAAAGTGAGGAACAAACTCACCAAGTTTGGTGCCAATCCAACCACGTT
TGAGCCTCCAAACGCTGGCTTGATGAAGATCGGATGGGAGGATGATCTCGGGCCGCTGCTGTCCTTTCTCCCGCCGGATT
TGGCGGAGGAAGAGCGCCTCCGGAGGCTGCTGCTTCTCCCGCCAAACGCCGCCGCTGCCCCACGCCGCTACAGCGGAAGG
GACTGCGCTGTCGGGCCGCCGCCCTCCTTCCTCCCACCGGATCTAGTGGAGGGGATGGCGCTGTCCGGCCACACGCCGAC
GACGCCGACGCCGGCACCGACGCACGCTGCTAACGACGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis