Browse Element(s) Details


OsAffx.31156.1.S1_at

Description tigr:9639.m02429
TID=OsAffx.31156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2713011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27080NANA11+15086186..15086955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27090OsAffx.19035.1.S1_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.19035.1.S1_x_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_at2/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_x_at1/1111+15087873..15090846hypothetical protein
LOC_Os11g27100NANA11+15094103..15096252retrotransposon, putative, centromere-specific
LOC_Os11g27110NANA11+15098616..15099968expressed protein
LOC_Os11g27120OsAffx.7215.1.S1_at11/1111+15100933..15101315hypothetical protein
LOC_Os11g27130OsAffx.31156.1.S1_at11/1111+15110974..15111707hypothetical protein
LOC_Os11g27140OsAffx.7216.2.S1_at9/1111+15116343..15117330hypothetical protein
LOC_Os11g27150NANA11+15119105..15122666transposon protein, putative, unclassified
LOC_Os11g27160NANA11+15123878..15125365retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31156.1.S1_at--97--8451Chr11:15111650..15111669 (20 bp)
GGCCAAGTTTACAAATCACACTCTT
LOC_Os11g27130
OsAffx.31156.1.S1_at--791--3291Chr11:15111262..15111282 (21 bp)
CACACTCTTGATGCTATTATCACTG
LOC_Os11g27130
OsAffx.31156.1.S1_at--663--491Chr11:15111182..15111252 (25 bp)
ATCGCTTCAATGAGGACCCATTCTC
LOC_Os11g27130
OsAffx.31156.1.S1_at--171--8111Chr11:15111169..15111193 (25 bp)
GGACCCATTCTCTAAGTTTGATATT
LOC_Os11g27130
OsAffx.31156.1.S1_at--340--231Chr11:15111149..15111173 (25 bp)
ATATTGATAAGATTGCTCGCTTGAC
LOC_Os11g27130
OsAffx.31156.1.S1_at--76--6591Chr11:15111139..15111163 (25 bp)
GATTGCTCGCTTGACTGAAATATAT
LOC_Os11g27130
OsAffx.31156.1.S1_at--400--6531Chr11:15111108..15111132 (25 bp)
GATTTCTCAAATGCTGATCCTTCTA
LOC_Os11g27130
OsAffx.31156.1.S1_at--296--7671Chr11:15111077..15111101 (25 bp)
GGGATCAACTTGAGACCTTCATTCT
LOC_Os11g27130
OsAffx.31156.1.S1_at--1043--5991Chr11:15111066..15111090 (25 bp)
GAGACCTTCATTCTACATGTTCCAA
LOC_Os11g27130
OsAffx.31156.1.S1_at--387--8491Chr11:15111025..15111049 (25 bp)
TGGCTGCCATTATTTTGGAAGTTTG
LOC_Os11g27130
OsAffx.31156.1.S1_at--186--8131Chr11:15111009..15111033 (25 bp)
GGAAGTTTGGCCATTAAGATAGTAG
LOC_Os11g27130
Target Sequence 
GGCCAAGTTTACAAATCACACTCTTGATGCTATTATCACTGAGATGAATCATCGCTTCAATGAGGACCCATTCTCTAAGT
TTGATATTGATAAGATTGCTCGCTTGACTGAAATATATGATCAAGATTTCTCAAATGCTGATCCTTCTAATATAAGGGAT
CAACTTGAGACCTTCATTCTACATGTTCCAAGAATTGATGATTTTGTTGGCTGCCATTATTTTGGAAGTTTGGCCATTAA
GATAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis