Browse Element(s) Details


OsAffx.31193.1.S1_at

Description tigr:9639.m02611
TID=OsAffx.31193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2892011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28860NANA11+16212363..16212815hypothetical protein
LOC_Os11g28870NANA11+16215824..16216669hypothetical protein
LOC_Os11g28880NANA11+16217226..16218396hypothetical protein
LOC_Os11g28890NANA11+16218742..16219935hypothetical protein
LOC_Os11g28900NANA11+16223493..16224101retrotransposon protein, putative, unclassified
LOC_Os11g28910Os.22662.1.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.22662.2.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.52981.1.S1_at10/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28920OsAffx.31193.1.S1_at11/1111+16235241..16235519hypothetical protein
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31193.1.S1_at--1063--7691Chr11:16235460..16235484 (25 bp)
GGGTCAGGAACAGATGGACACCATC
LOC_Os11g28920
OsAffx.31193.1.S1_at--913--1311Chr11:16235449..16235473 (25 bp)
AGATGGACACCATCCTGTCCTGGGC
LOC_Os11g28920
OsAffx.31193.1.S1_at--8--1731Chr11:16235441..16235465 (25 bp)
ACCATCCTGTCCTGGGCGTTGCCGG
LOC_Os11g28920
OsAffx.31193.1.S1_at--724--3951Chr11:16235419..16235443 (25 bp)
CGGAGAAGGATTACGAGCCGGTCTT
LOC_Os11g28920
OsAffx.31193.1.S1_at--669--131Chr11:16235410..16235434 (25 bp)
ATTACGAGCCGGTCTTCACTGTGAT
LOC_Os11g28920
OsAffx.31193.1.S1_at--628--5871Chr11:16235405..16235429 (25 bp)
GAGCCGGTCTTCACTGTGATCTCCT
LOC_Os11g28920
OsAffx.31193.1.S1_at--243--2931Chr11:16235357..16235381 (25 bp)
AAGGACCGCCTCCTGGCCATCGGAA
LOC_Os11g28920
OsAffx.31193.1.S1_at--253--4531Chr11:16235330..16235354 (25 bp)
GCCGCCATCAAGAACAAGTTGCTCC
LOC_Os11g28920
OsAffx.31193.1.S1_at--1079--2451Chr11:16235318..16235342 (25 bp)
AACAAGTTGCTCCACCACAAGAGGG
LOC_Os11g28920
OsAffx.31193.1.S1_at--761--9691Chr11:16235278..16235302 (25 bp)
TCAAGGACAACCTCGATCGCTTCGG
LOC_Os11g28920
OsAffx.31193.1.S1_at--94--5611Chr11:16235273..16235297 (25 bp)
GACAACCTCGATCGCTTCGGTTACG
LOC_Os11g28920
Target Sequence 
GGGTCAGGAACAGATGGACACCATCCTGTCCTGGGCGTTGCCGGAGAAGGATTACGAGCCGGTCTTCACTGTGATCTCCT
CCCACACCGACGAGCAGAAGGAGAAGGACCGCCTCCTGGCCATCGGAACCGCCGCCATCAAGAACAAGTTGCTCCACCAC
AAGAGGGGGCTGCAGGCCTTCGTCAAGGACAACCTCGATCGCTTCGGTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis