Browse Element(s) Details


OsAffx.31204.1.S1_at

Description tigr:9639.m02681
TID=OsAffx.31204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g296209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29570NANA11+16650148..16655953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29580OsAffx.19070.1.S1_at9/1111+16660016..16660264hypothetical protein
LOC_Os11g29589NANA11+16664185..16664436NA
LOC_Os11g29600OsAffx.23573.1.S1_s_at3/1111+16666295..16666629RING zinc finger protein, putative
LOC_Os11g29610NANA11+16668206..16672462retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29620OsAffx.31204.1.S1_at9/1111+16676622..16677206hypothetical protein
LOC_Os11g29630NANA11+16677942..16679530expressed protein
LOC_Os11g29640Os.14491.2.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29640Os.47463.1.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29650NANA11+16682764..16685354transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29660NANA11+16687983..16691287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29670OsAffx.13948.1.S1_at3/1111+16697924..16698379hypothetical protein
LOC_Os11g29680NANA11+16700361..16703053expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31204.1.S1_at--252--3612Chr11:16677091..16677115 (25 bp)
CATTGGCGACCGACGAAGGGAAGAC
LOC_Os11g29620
OsAffx.31204.1.S1_at--343--10311Chr11:16677062..16677086 (25 bp)
TTTCTTTTCAGCACGTCGCCCCAAA
LOC_Os11g29620
OsAffx.31204.1.S1_at--768--10571Chr11:16677034..16677058 (25 bp)
TTCTCCGCGACCAACGATTGGTGAC
LOC_Os11g29620
OsAffx.31204.1.S1_at--842--1331Chr11:16676978..16677002 (25 bp)
AGAGGTGGCGACTGCCGCCATGACC
LOC_Os11g29620
OsAffx.31204.1.S1_at--356--4291NONE
CCTCGACAAGTTCCCGTTCAATGTT
NONE
OsAffx.31204.1.S1_at--294--6711NONE
GTTCCCGTTCAATGTTGACTTCACT
NONE
OsAffx.31204.1.S1_at--889--3191Chr11:16676928..16676952 (25 bp)
CAATGTTGACTTCACTAGCGGCAGT
LOC_Os11g29620
OsAffx.31204.1.S1_at--818--2011Chr11:16676915..16676939 (25 bp)
ACTAGCGGCAGTGACTTTCGTTGGT
LOC_Os11g29620
OsAffx.31204.1.S1_at--117--5311Chr11:16676847..16676871 (25 bp)
GAAGGACATTGCCAGGCTCGCTGCA
LOC_Os11g29620
OsAffx.31204.1.S1_at--185--3491Chr11:16676835..16676859 (25 bp)
CAGGCTCGCTGCATCCATGCGCAGG
LOC_Os11g29620
OsAffx.31204.1.S1_at--567--9711Chr11:16676767..16676791 (25 bp)
TCAATCGACCAATCAACCAAGCTGC
LOC_Os11g29620
Target Sequence 
CATTGGCGACCGACGAAGGGAAGACGGTCTTTCTTTTCAGCACGTCGCCCCAAACCTTTCTCCGCGACCAACGATTGGTG
ACGCGGCGGCGGTGGCGGCGACGCAGGAGAAGGAGAGGTGGCGACTGCCGCCATGACCTCGCCCTCCTCGACAAGTTCCC
GTTCAATGTTGACTTCACTAGCGGCAGTGACTTTCGTTGGTGGCGGCGGCCGACGAGCGGAGAGAGGAGTGGCGGCCGAA
GCAAGAAGGACATTGCCAGGCTCGCTGCATCCATGCGCAGGGTGGGGAGAGGAGCAGAGGTGGAGATGGACGCGACGGCG
GTGCTCAATCGACCAATCAACCAAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis