Browse Element(s) Details


OsAffx.31221.1.S1_at

Description tigr:9639.m02733
TID=OsAffx.31221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3022010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30190OsAffx.19081.1.S1_at11/1111+17045441..17046100hypothetical protein
LOC_Os11g30200OsAffx.31220.1.S1_at11/1111+17056305..17058410hypothetical protein
LOC_Os11g30210OsAffx.7254.1.S1_at1/1111+17058622..17062453NB-ARC domain containing protein
LOC_Os11g30220OsAffx.31221.1.S1_at10/1111+17068717..17069770hypothetical protein
LOC_Os11g30230OsAffx.19082.1.S1_at10/1111+17072662..17073647hypothetical protein
LOC_Os11g30240OsAffx.19083.1.S1_at11/1111+17076205..17079543hypothetical protein
LOC_Os11g30250NANA11+17083108..17083314hypothetical protein
LOC_Os11g30260OsAffx.92.1.S1_at8/1111+17086043..17086818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31221.1.S1_at--419--9591Chr11:17068747..17068771 (25 bp)
TCATTGCCGTTGACTCCAACGACAA
LOC_Os11g30220
OsAffx.31221.1.S1_at--679--6651NONE
GTTGACTCCAACGACAAGGAAGGCA
NONE
OsAffx.31221.1.S1_at--296--2932Chr11:17069505..17069524 (20 bp)
AAGGAAGGCAACGATGCTGGACGAC
LOC_Os11g30220
OsAffx.31221.1.S1_at--195--1991Chr11:17069578..17069602 (25 bp)
ACTGCGACGCAAGAACCGTGAATTG
LOC_Os11g30220
OsAffx.31221.1.S1_at--159--5171Chr11:17069586..17069610 (25 bp)
GCAAGAACCGTGAATTGGAGATCAA
LOC_Os11g30220
OsAffx.31221.1.S1_at--581--4271Chr11:17069674..17069698 (25 bp)
CCTCCAGGATGTCCAGATGGCTATC
LOC_Os11g30220
OsAffx.31221.1.S1_at--792--991Chr11:17069679..17069703 (25 bp)
AGGATGTCCAGATGGCTATCGTGAA
LOC_Os11g30220
OsAffx.31221.1.S1_at--719--7271Chr11:17069684..17069708 (25 bp)
GTCCAGATGGCTATCGTGAAGTACC
LOC_Os11g30220
OsAffx.31221.1.S1_at--659--1311Chr11:17069688..17069712 (25 bp)
AGATGGCTATCGTGAAGTACCGCCT
LOC_Os11g30220
OsAffx.31221.1.S1_at--691--8491Chr11:17069691..17069715 (25 bp)
TGGCTATCGTGAAGTACCGCCTGGG
LOC_Os11g30220
OsAffx.31221.1.S1_at--559--6291Chr11:17069716..17069740 (25 bp)
GATACGGAAACGTATCCGGGAGCTT
LOC_Os11g30220
Target Sequence 
TCATTGCCGTTGACTCCAACGACAAGGAAGGCAACGATGCTGGACGACGAGAAGACCATCCTCGAGCAGCAGATCGCCGC
CGCAACAGCGAGGCTAGAGGAACTGCGACGCAAGAACCGTGAATTGGAGATCAAGCTCATCGTCTGCGACCTTATGTCAG
GCCGTCGCAACAACGTGGATGACCTGACCGTGGACATCCTCCAGGATGTCCAGATGGCTATCGTGAAGTACCGCCTGGGG
ATACGGAAACGTATCCGGGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis