Browse Element(s) Details


OsAffx.31220.1.S1_at

Description tigr:9639.m02732
TID=OsAffx.31220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30180OsAffx.31219.1.S1_at11/1111+17042689..17043009EF hand family protein
LOC_Os11g30190OsAffx.19081.1.S1_at11/1111+17045441..17046100hypothetical protein
LOC_Os11g30200OsAffx.31220.1.S1_at11/1111+17056305..17058410hypothetical protein
LOC_Os11g30210OsAffx.7254.1.S1_at1/1111+17058622..17062453NB-ARC domain containing protein
LOC_Os11g30220OsAffx.31221.1.S1_at10/1111+17068717..17069770hypothetical protein
LOC_Os11g30230OsAffx.19082.1.S1_at10/1111+17072662..17073647hypothetical protein
LOC_Os11g30240OsAffx.19083.1.S1_at11/1111+17076205..17079543hypothetical protein
LOC_Os11g30250NANA11+17083108..17083314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31220.1.S1_at--726--4771Chr11:17056754..17056778 (25 bp)
GCTGCTGAAGATAACATACCTGAAC
LOC_Os11g30200
OsAffx.31220.1.S1_at--996--291Chr11:17056739..17056763 (25 bp)
ATACCTGAACACCTCATGTTGGAGT
LOC_Os11g30200
OsAffx.31220.1.S1_at--658--6851Chr11:17056716..17056740 (25 bp)
GTTTGAGAAGGCCTCCAAGTCTGCT
LOC_Os11g30200
OsAffx.31220.1.S1_at--146--2851Chr11:17056700..17056724 (25 bp)
AAGTCTGCTCCACATGACGTGTCAG
LOC_Os11g30200
OsAffx.31220.1.S1_at--103--691Chr11:17056687..17056711 (25 bp)
ATGACGTGTCAGTAGCTCGAGAGAC
LOC_Os11g30200
OsAffx.31220.1.S1_at--627--3231Chr11:17056661..17056685 (25 bp)
CAAGAAGGACAGTTTGCTAGCAATT
LOC_Os11g30200
OsAffx.31220.1.S1_at--757--5911Chr11:17056574..17056598 (25 bp)
GAGCTTTTTGATTCACAAGATTCCG
LOC_Os11g30200
OsAffx.31220.1.S1_at--203--2351Chr11:17056534..17056558 (25 bp)
AAAGCTTGGGAGTGGTGCTACCTAA
LOC_Os11g30200
OsAffx.31220.1.S1_at--347--5131Chr11:17056409..17056433 (25 bp)
GCACAAAATGCATTCCTCAACAAAG
LOC_Os11g30200
OsAffx.31220.1.S1_at--545--9711Chr11:17056393..17056417 (25 bp)
TCAACAAAGGTCAGGGCTCATCCCC
LOC_Os11g30200
OsAffx.31220.1.S1_at--35--6891Chr11:17056351..17056375 (25 bp)
GTATTTCTCTTGCTAACTTAGCTAG
LOC_Os11g30200
Target Sequence 
GCTGCTGAAGATAACATACCTGAACACCTCATGTTGGAGTTTGAGAAGGCCTCCAAGTCTGCTCCACATGACGTGTCAGT
AGCTCGAGAGACACAAGAAGGACAGTTTGCTAGCAATTGTGAGGATGGTGTGGAAGTGGAAGGTGATGAGGAAGGGAAGC
TGCAGCTAGGAGACAGTGAAGAGCTTTTTGATTCACAAGATTCCGAGGATGCCTTTGCCAAAAGCTTGGGAGTGGTGCTA
CCTAAAGAGGAGATGGGAAGTCAAGAGGAGGAAAGAAGGGCAAGCAAGAGATTCAGAGACAGGGAGGACAAGAAGACTCT
AGAGATGACAATGAATAGGAAAGAAGCACAAAATGCATTCCTCAACAAAGGTCAGGGCTCATCCCCTCTTCATCATGATT
CAAGTATTTCTCTTGCTAACTTAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis