Browse Element(s) Details


OsAffx.19081.1.S1_at

Description tigr:9639.m02731
TID=OsAffx.19081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3019011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30150OsAffx.31780.2.S1_s_at10/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_x_at2/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.2.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30150OsAffx.31780.1.S1_at1/1111+17024489..17027864transposon protein, putative, unclassified
LOC_Os11g30159OsAffx.30217.1.S1_x_at1/1111+17030345..17032190NA
LOC_Os11g30170Os.14919.1.S1_at2/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30170OsAffx.29313.1.S1_at1/1111+17035369..17041086transposon protein, putative, Mutator sub-class
LOC_Os11g30180OsAffx.31219.1.S1_at11/1111+17042689..17043009EF hand family protein
LOC_Os11g30190OsAffx.19081.1.S1_at11/1111+17045441..17046100hypothetical protein
LOC_Os11g30200OsAffx.31220.1.S1_at11/1111+17056305..17058410hypothetical protein
LOC_Os11g30210OsAffx.7254.1.S1_at1/1111+17058622..17062453NB-ARC domain containing protein
LOC_Os11g30220OsAffx.31221.1.S1_at10/1111+17068717..17069770hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19081.1.S1_at--446--2552Chr11:17045514..17045538 (25 bp)
AACTCGAACAGCTGAGCATGCTTGG
LOC_Os11g30190
OsAffx.19081.1.S1_at--243--831Chr11:17045564..17045588 (25 bp)
ATGGTTGTTGCTGGCTGGACATCCA
LOC_Os11g30190
OsAffx.19081.1.S1_at--696--2092Chr11:17045582..17045606 (25 bp)
ACATCCAGTGGGTACGGTGCAGCCG
LOC_Os11g30190
OsAffx.19081.1.S1_at--1148--10032Chr11:17045658..17045682 (25 bp)
TAGATCGCCCAAATTCAACAACCAT
LOC_Os11g30190
OsAffx.19081.1.S1_at--385--5571Chr11:17045768..17045792 (25 bp)
GAAAGGCGTTCAAAGCAGGCTGAGA
LOC_Os11g30190
OsAffx.19081.1.S1_at--10--31Chr11:17045813..17045837 (25 bp)
ATTGGCACGGTGCTTTCTAGGCCAG
LOC_Os11g30190
OsAffx.19081.1.S1_at--221--9551Chr11:17045828..17045852 (25 bp)
TCTAGGCCAGCCGTTGCACAATCAA
LOC_Os11g30190
OsAffx.19081.1.S1_at--573--7551Chr11:17045906..17045930 (25 bp)
GGGCCTTACCACATGCGACATCAAG
LOC_Os11g30190
OsAffx.19081.1.S1_at--616--2411Chr11:17045932..17045956 (25 bp)
AAAACGAAGCCTTACGTCCATCGAT
LOC_Os11g30190
OsAffx.19081.1.S1_at--799--10471Chr11:17045943..17045967 (25 bp)
TTACGTCCATCGATCCAATGGCTGC
LOC_Os11g30190
OsAffx.19081.1.S1_at--433--3191Chr11:17045958..17045982 (25 bp)
CAATGGCTGCCTCAACAACGTCGCT
LOC_Os11g30190
Target Sequence 
AACTCGAACAGCTGAGCATGCTTGGAACCTCAACGGCCGTGCCATCTATGATGGTTGTTGCTGGCTGGACATCCAGTGGG
TACGGTGCAGCCGCTGAACGACGACAACACCAACAATACCCTGGCACCAGCAACAACCCTCCCCTAGATCGCCCAAATTC
AACAACCATCCCCCAGATCACGAAGGAATTGAAGGAAGAAGTGTTGGAACTGAAGGCCATGTTGCAGATGATGGACTCAA
TGGCAAAGGTGGAAGAAAGGCGTTCAAAGCAGGCTGAGAGACGTAGCGAAGATGCGGTGATTGGCACGGTGCTTTCTAGG
CCAGCCGTTGCACAATCAACTCCGCACCGCACTCCATCTTCCCTGCGCCCCGGGCAAAGCACCGTCTTCAAGGGGCCTTA
CCACATGCGACATCAAGCAAAACGAAGCCTTACGTCCATCGATCCAATGGCTGCCTCAACAACGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis