Browse Element(s) Details


OsAffx.31247.1.S1_at

Description tigr:9639.m02865
TID=OsAffx.31247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3155010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31500OsAffx.31246.1.S1_at11/1111+17907015..17913821hypothetical protein
LOC_Os11g31510OsAffx.11235.1.S1_at2/1111+17914325..17915554transposon protein, putative, Pong sub-class
LOC_Os11g31520NANA11+17916308..17917784transposon protein, putative, Pong sub-class, expressed
LOC_Os11g31530OsAffx.19103.1.S1_at10/1111+17923442..17925472BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative
LOC_Os11g31540OsAffx.19104.1.S1_at11/1111+17927946..17929837BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g31550OsAffx.31247.1.S1_at10/1111+17932830..17935422Leucine Rich Repeat family protein
LOC_Os11g31560OsAffx.19105.1.S1_at11/1111+17940840..17942929Leucine Rich Repeat family protein
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31247.1.S1_at--630--8171Chr11:17934583..17934607 (25 bp)
GGAACATCTAGTCAGCCTTGATCTT
LOC_Os11g31550
OsAffx.31247.1.S1_at--314--6431Chr11:17934564..17934588 (25 bp)
GATCTTTATAGCAACCTGCTCACTG
LOC_Os11g31550
OsAffx.31247.1.S1_at--262--8251Chr11:17934540..17934564 (25 bp)
GGCACGATACCAACTTCGCTTGGTG
LOC_Os11g31550
OsAffx.31247.1.S1_at--399--4431Chr11:17934517..17934540 (24 bp)
GCCATGAGCCGTTTGCGATATCTGA
LOC_Os11g31550
OsAffx.31247.1.S1_at--13--7611Chr11:17934344..17934368 (25 bp)
GGGCAATCTGATGAGCCTTGAGGAT
LOC_Os11g31550
OsAffx.31247.1.S1_at--151--10671Chr11:17934285..17934309 (25 bp)
TTCCGGCTTCTCTGGGCAATGTCAA
LOC_Os11g31550
OsAffx.31247.1.S1_at--522--9091Chr11:17934240..17934264 (25 bp)
TGCTCATTCCTAAATTTGCCAACAG
LOC_Os11g31550
OsAffx.31247.1.S1_at--453--6831Chr11:17934144..17934168 (25 bp)
GTTTACATAAACTACATCCTCCACC
LOC_Os11g31550
OsAffx.31247.1.S1_at--1062--5091Chr11:17933866..17933890 (25 bp)
GCACTGTGCCGTTGGAAATCCTCTC
LOC_Os11g31550
OsAffx.31247.1.S1_at--273--1371NONE
AGAGCTGCAGCTCGAATCTGTGGCC
NONE
OsAffx.31247.1.S1_at--903--7531Chr11:17932888..17932912 (25 bp)
GTGGCCCACCTGTCCAAGAAAGGGA
LOC_Os11g31550
Target Sequence 
GGAACATCTAGTCAGCCTTGATCTTTATAGCAACCTGCTCACTGGCACGATACCAACTTCGCTTGGTGCCATGAGCCGTT
TGCGATATCTGAGGTTATCTCAGAACAAACTGAGAGGGGCAATACCCCCATCACTGGGCAATCTGATGAGCCTTGAGGAT
TTGGAGCTTCACAAGAATGCATTGAGTGGCTCTATTCCGGCTTCTCTGGGCAATGTCAAAACATTGAATTACTTGTATAT
GCTCATTCCTAAATTTGCCAACAGAGAAATTACGAGATATTTTTTCACCAAATTGGGAACCTCCAAGATACTTTTAACTT
ATAATAGTAGTTTTTGTTTACATAAACTACATCCTCCACCCCAAAAGCGGTTGAATGGTAATATGCTGACTGGCACTGTG
CCGTTGGAAATCCTCTCTCTTCTTGTCTCCAACCTAGTTGAATTAAATGTTGCGAATAATAATCTGGATGGCACAGACAG
AGAATCTGGAACGAGAGCTGCAGCTCGAATCTGTGGCCCACCTGTCCAAGAAAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis