Browse Element(s) Details


OsAffx.3127.1.S1_at

Description tigr:9631.m00334
TID=OsAffx.3127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=IQ calmodulin-binding motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0421011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04169Os.8412.1.S1_at11/113+1888312..1898505ATP phosphoribosyltransferase family protein, expressed
LOC_Os03g04190OsAffx.3126.1.S1_at11/113+1899154..1901007Cytochrome P450 78A3, putative
LOC_Os03g04210OsAffx.3127.1.S1_at11/113+1915380..1916381IQ calmodulin-binding motif family protein, expressed
LOC_Os03g04220Os.14372.1.S1_at11/113+1917326..1918802Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04230NANA3+1924613..1926500transposon protein, putative, unclassified
LOC_Os03g04240Os.15269.1.S1_at11/113+1927427..1928654Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04250Os.23119.1.S1_at9/113+1931387..1932563Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04260Os.2614.1.S1_at11/113+1933783..1935070Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04270Os.25215.1.A1_at11/113+1935970..1938874Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3127.1.S1_at--670--3471Chr03:1915737..1915761 (25 bp)
CAGGTCGGCTGCTTCCAGTCGTCGG
LOC_Os03g04210
OsAffx.3127.1.S1_at--305--1851Chr03:1915797..1915821 (25 bp)
ACGCAGCGCGCGTGCTACGTCCGTG
LOC_Os03g04210
OsAffx.3127.1.S1_at--911--3911Chr03:1915934..1915958 (25 bp)
CGGCGACGTCAAGGTTTACAACACT
LOC_Os03g04210
OsAffx.3127.1.S1_at--158--6791Chr03:1915947..1915971 (25 bp)
GTTTACAACACTGGCCTCGTGGAGG
LOC_Os03g04210
OsAffx.3127.1.S1_at--669--2791Chr03:1915999..1916023 (25 bp)
AAGAGGAGACCAGCTCGAACGACGA
LOC_Os03g04210
OsAffx.3127.1.S1_at--583--5851Chr03:1916006..1916030 (25 bp)
GACCAGCTCGAACGACGAGTACGCG
LOC_Os03g04210
OsAffx.3127.1.S1_at--928--9091Chr03:1916032..1916056 (25 bp)
TGCTGTGCAGGCAGGGCTTCCCACG
LOC_Os03g04210
OsAffx.3127.1.S1_at--352--4411Chr03:1916098..1916212 (25 bp)
GCCACCTGGCGAGGCGAGCGTTCAA
LOC_Os03g04210
OsAffx.3127.1.S1_at--1018--3951Chr03:1916275..1916299 (25 bp)
CGGAGGTGGCGATCCACTGCATGCA
LOC_Os03g04210
OsAffx.3127.1.S1_at--1134--571Chr03:1916286..1916310 (25 bp)
ATCCACTGCATGCAGGCGATGGTGC
LOC_Os03g04210
OsAffx.3127.1.S1_at--237--4151Chr03:1916322..1916346 (25 bp)
CGCGTGCGCGCCAGGCAGATGCTCA
LOC_Os03g04210
Target Sequence 
CAGGTCGGCTGCTTCCAGTCGTCGGCGCCTGCCGCCGCAAGGACGCCGCGGACTCCCACGACGCAGCGCGCGTGCTACGT
CCGTGGCACGGGCACGGCTCAGGGCAACGCGAAGCTGGGCAGGCGGCGCCGCTGGCTCCGGTCCACGGGCCAGACGCCAC
GCCGCACGGCGCGCGCGGGTGGCGACGTCGGCAACGGCGGCGACGTCAAGGTTTACAACACTGGCCTCGTGGAGGCCGCC
GCCGAGGAGTCGGTAACAAAGGAAGAGGAGACCAGCTCGAACGACGAGTACGCGCTGCTGTGCAGGCAGGGCTTCCCACG
CGAGGACGTGGCCGCGGTCACCATCCAAGCCTACTTCCGAGGCCACCTGGCGAGGCGAGCGTTCAAGGCGCTGAAGAGCC
TGGTGCGGCTGCAGGCGGTGGCGCGGGGGGCGTACGTGCGGCGGCAGGCGGAGGTGGCGATCCACTGCATGCAGGCGATG
GTGCGGCTGCAGATGCGCGTGCGCGCCAGGCAGATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis