Browse Element(s) Details


OsAffx.3126.1.S1_at

Description tigr:9631.m00332
TID=OsAffx.3126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0419011/11Cytochrome P450 78A3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class
LOC_Os03g04169Os.8412.1.S1_at11/113+1888312..1898505ATP phosphoribosyltransferase family protein, expressed
LOC_Os03g04190OsAffx.3126.1.S1_at11/113+1899154..1901007Cytochrome P450 78A3, putative
LOC_Os03g04210OsAffx.3127.1.S1_at11/113+1915380..1916381IQ calmodulin-binding motif family protein, expressed
LOC_Os03g04220Os.14372.1.S1_at11/113+1917326..1918802Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04230NANA3+1924613..1926500transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3126.1.S1_at--904--5751Chr03:1899672..1899696 (25 bp)
GACGTCCAAGCCAACGTGCACCGTG
LOC_Os03g04190
OsAffx.3126.1.S1_at--7--2591Chr03:1899660..1899684 (25 bp)
AACGTGCACCGTGAGCTCGACGCGG
LOC_Os03g04190
OsAffx.3126.1.S1_at--492--9091Chr03:1899572..1899596 (25 bp)
TGCTCAAGGAGGCTCTCCGGATGCA
LOC_Os03g04190
OsAffx.3126.1.S1_at--374--9511Chr03:1899530..1899554 (25 bp)
TCTCGTGGCGCCACAGGGCCATATC
LOC_Os03g04190
OsAffx.3126.1.S1_at--364--2131Chr03:1899518..1899542 (25 bp)
ACAGGGCCATATCCGACACCTACGT
LOC_Os03g04190
OsAffx.3126.1.S1_at--55--1811Chr03:1899465..1899489 (25 bp)
ACCGCCATGGTGAACCAGTGGGCGA
LOC_Os03g04190
OsAffx.3126.1.S1_at--396--9171Chr03:1899303..1899327 (25 bp)
TGCCCCGGCAAGTCACTGGCCATGA
LOC_Os03g04190
OsAffx.3126.1.S1_at--744--9671Chr03:1899291..1899315 (25 bp)
TCACTGGCCATGACGACCGTGACCG
LOC_Os03g04190
OsAffx.3126.1.S1_at--417--691Chr03:1899282..1899306 (25 bp)
ATGACGACCGTGACCGCCTGGATGG
LOC_Os03g04190
OsAffx.3126.1.S1_at--571--8931Chr03:1899272..1899296 (25 bp)
TGACCGCCTGGATGGCAACGCTGCT
LOC_Os03g04190
OsAffx.3126.1.S1_at--113--1051Chr03:1899200..1899224 (25 bp)
AGGTGCTCCGCCTGTCGTGCGAGAT
LOC_Os03g04190
Target Sequence 
GACGTCCAAGCCAACGTGCACCGTGAGCTCGACGCGGTGGTCGGGCGGAGCAACACGGTCGCCGAGTCCGCCGTGCCGTC
GCTGCCTTACCTGCAGGCGCTGCTCAAGGAGGCTCTCCGGATGCACCCGCCGGGCCCGCTCCTCTCGTGGCGCCACAGGG
CCATATCCGACACCTACGTCGACGGCCACCTCGTCCCGGCCGGCACCACCGCCATGGTGAACCAGTGGGCGATGAGCCGC
GACGCCGACGTGTGGGACGCGCCGCTCGAGTTCCAGCCGGAGCGGTTCCTCCCCGGCGGCAAGGCGCACGGCGTGTCCGT
GCTCGGCGCCGACGGCCGCCTCGTGCCGTTCGGGTCCGGCAGGAGGAGCTGCCCCGGCAAGTCACTGGCCATGACGACCG
TGACCGCCTGGATGGCAACGCTGCTGCACGAGTTCGAGTGGACGCCGGCGTCCGGCGCCGTCGACTTGTCGGAGGTGCTC
CGCCTGTCGTGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis