Browse Element(s) Details


Os.17315.1.S1_at

Description gb:AK067089.1
DB_XREF= gi:32977107
TID=Os.17315.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095F21, full insert sequence.
FL= gb:AK067089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0414011/11serine O-acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class
LOC_Os03g04169Os.8412.1.S1_at11/113+1888312..1898505ATP phosphoribosyltransferase family protein, expressed
LOC_Os03g04190OsAffx.3126.1.S1_at11/113+1899154..1901007Cytochrome P450 78A3, putative

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0009970biological_processcellular response to sulfate starvation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0009001molecular_functionserine O-acetyltransferase activity
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17315.1.S1_at--1081--5911Chr03:1872804..1872828 (25 bp)
GAGCATGTTGCCGTTAGTTTTTCAG
LOC_Os03g04140
Os.17315.1.S1_at--31--10631Chr03:1872402..1872426 (25 bp)
TTCGATGATGTTTGGCTGGCAGTTC
LOC_Os03g04140
Os.17315.1.S1_at--21--10111Chr03:1872365..1872389 (25 bp)
TATGTTTCGACATTTCTTCCCAGAG
LOC_Os03g04140
Os.17315.1.S1_at--1050--10111Chr03:1872320..1872344 (25 bp)
TATGCAAGGGTGCTTCTCTTTTTTG
LOC_Os03g04140
Os.17315.1.S1_at--505--9531Chr03:1872304..1872328 (25 bp)
TCTTTTTTGCCCAGGTACCCATGGT
LOC_Os03g04140
Os.17315.1.S1_at--803--2691Chr03:1872275..1872299 (25 bp)
AAGCTCCCCAGTTATATTTTCTCGT
LOC_Os03g04140
Os.17315.1.S1_at--640--7551Chr03:1872252..1872276 (25 bp)
GTGGCCTTTGGACCGCTGTAATAAT
LOC_Os03g04140
Os.17315.1.S1_at--699--5851Chr03:1872146..1872170 (25 bp)
GACCAGCAGCAACTATGTACTTCAG
LOC_Os03g04140
Os.17315.1.S1_at--1071--2211Chr03:1872118..1872142 (25 bp)
ACAAGCTTTCTTTTTTGAATCCCAG
LOC_Os03g04140
Os.17315.1.S1_at--492--9011Chr03:1872103..1872127 (25 bp)
TGAATCCCAGTAGCATCAGCGTAGT
LOC_Os03g04140
Os.17315.1.S1_at--632--5691Chr03:1872072..1872096 (25 bp)
GACTTAGTGCAAGCTTTCTTTTCTG
LOC_Os03g04140
Target Sequence 
GAGCATGTTGCCGTTAGTTTTTCAGATGACANAGCTAATGGAAGTGTTGTGAAGTAAAAAANGGTTCGATGATGTTTGGC
TGGCAGTTCAAAGGAATAGCATATGTTTCGACATTTCTTCCCAGAGGACAGCACTGGGTATCTGATTATGCAAGGGTGCT
TCTCTTTTTTGCCCAGGTACCCATGGTCCTGAAGCTCCCCAGTTATATTTTCTCGTGGCCTTTGGACCGCTGTAATAATG
TGATGTTTATTTTTNCTGGTTACTTTGTAAGGACTATGTACTGGTAGTGGAGACCAGTACATAGTTGCTACTGGTAGTAG
AGACCAGCAGCAACTATGTACTTCAGAATACAAGCTTTCTTTTTTGAATCCCAGTAGCATCAGCGTAGTGCTTAAGACTT
AGTGCAAGCTTTCTTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis