Browse Element(s) Details


Os.52327.1.S1_at

Description gb:AK066406.1
DB_XREF= gi:32976424
TID=Os.52327.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060C21, full insert sequence.
FL= gb:AK066406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0412011/11AMP-dependent synthetase and ligase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52327.1.S1_at--129--5751Chr03:1861514..1861538 (25 bp)
GACGGCGCACGAGATCATCGCGTTC
LOC_Os03g04120
Os.52327.1.S1_at--241--6051Chr03:1861504..1861528 (25 bp)
GAGATCATCGCGTTCTGCCGTGCGC
LOC_Os03g04120
Os.52327.1.S1_at--500--1091Chr03:1861381..1861405 (25 bp)
AGGGCCATGGGAAGCCTGCCTATGC
LOC_Os03g04120
Os.52327.1.S1_at--64--8191Chr03:1861372..1861396 (25 bp)
GGAAGCCTGCCTATGCAAAGCAAAT
LOC_Os03g04120
Os.52327.1.S1_at--930--7011Chr03:1861332..1861356 (25 bp)
GTACTATTGTACTAGCTGCGATTGG
LOC_Os03g04120
Os.52327.1.S1_at--1075--4771Chr03:1861318..1861342 (25 bp)
GCTGCGATTGGTTTTGCTGCCAAGA
LOC_Os03g04120
Os.52327.1.S1_at--726--9011Chr03:1861282..1861306 (25 bp)
TGCACGACTACTCCGATATTTTCTG
LOC_Os03g04120
Os.52327.1.S1_at--478--6271Chr03:1861228..1861252 (25 bp)
GATGTTGCATAAATTCCGTGTTAAA
LOC_Os03g04120
Os.52327.1.S1_at--46--2391Chr03:1861205..1861229 (25 bp)
AAACTGAGTCAAGTGCAGCATCATG
LOC_Os03g04120
Os.52327.1.S1_at--502--691Chr03:1861125..1861149 (25 bp)
ATGAGGAATATACCCTCACCGTTTT
LOC_Os03g04120
Os.52327.1.S1_at--397--4211Chr03:1861093..1861116 (24 bp)
CCCCTCCTCCACTTATATATGAGTT
LOC_Os03g04120
Target Sequence 
GACGGCGCACGAGATCATCGCGTTCTGCCGTGCGCGGCTGCCGCGTTACATGGCGCCGAGGACGGTGGTGTTCGGCGACC
TGCCCAAGACGTCGACGGGGAAGACGCAGAAGTTCTTGCTCCGGGAGAAGGCCAGGGCCATGGGAAGCCTGCCTATGCAA
AGCAAATCCAAGTTGTAGTCTTGTACTATTGTACTAGCTGCGATTGGTTTTGCTGCCAAGATGACAGCGCCCTGCACGAC
TACTCCGATATTTTCTGATGATACNAGTATTTGGGAAGACCANCACGGATGTTGCATAAATTCCGTGTTAAAACTGAGTC
AAGTGCAGCATCATGTAGGATGCACTTAAAAGTAATCATAAAAAAGAATATACCCTCTTATTCGGGGAAATGAGGAATAT
ACCCTCACCGTTTTTAAACACCCCCTCCTCCACTTATATATGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis