Browse Element(s) Details


Os.1191.1.S1_at

Description gb:AK099355.1
DB_XREF= gi:32984564
TID=Os.1191.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1191 (NCBI UniGene Cluster)
UG_TITLE=Clone MIRCH38 chitinase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044P19, full insert sequence.
FL= gb:AK099355.1 gb:AK059871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0406011/11Basic endochitinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed
LOC_Os03g04040NANA3+1823179..1824168hypothetical protein
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1191.1.S1_at--570--9911Chr03:1840559..1840583 (25 bp)
TACTGCGACATGTTCCGCGTAGGAT
LOC_Os03g04060
Os.1191.1.S1_at--1110--6471Chr03:1840581..1840605 (25 bp)
GATACGGAGATAACATAGCCTGCAG
LOC_Os03g04060
Os.1191.1.S1_at--630--9991Chr03:1840596..1840620 (25 bp)
TAGCCTGCAGGGACCAGAAGCCCTA
LOC_Os03g04060
Os.1191.1.S1_at--882--9931Chr03:1840658..1840682 (25 bp)
TACGTCGTCATAAGCGGATTCTCCT
LOC_Os03g04060
Os.1191.1.S1_at--733--7931Chr03:1840673..1840697 (25 bp)
GGATTCTCCTAGTGCTAGTACAGCT
LOC_Os03g04060
Os.1191.1.S1_at--778--3831Chr03:1840696..1840720 (25 bp)
CTGCTGGTTGCTTGCTAATGGCTAG
LOC_Os03g04060
Os.1191.1.S1_at--672--10011Chr03:1840718..1840742 (25 bp)
TAGCTTAGCCTTCGCGTACATACGT
LOC_Os03g04060
Os.1191.1.S1_at--1036--2691Chr03:1840769..1840793 (25 bp)
AAGCTAGCAGAGAGCGTTCGCGGAT
LOC_Os03g04060
Os.1191.1.S1_at--663--671Chr03:1840816..1840840 (25 bp)
ATGACACATGGTCGCTTATCTCACA
LOC_Os03g04060
Os.1191.1.S1_at--83--7811Chr03:1840825..1840849 (25 bp)
GGTCGCTTATCTCACATGTTATTGT
LOC_Os03g04060
Os.1191.1.S1_at--281--10411Chr03:1840859..1840883 (25 bp)
TTATTACTGGTGGAACGATGCCCCT
LOC_Os03g04060
Target Sequence 
TACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACT
GGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCT
AGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCAT
GTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATG
CCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis