Browse Element(s) Details


Os.27166.1.A1_s_at

Description gb:CB661795
DB_XREF= gi:29665520
DB_XREF=OSJNEd05C01.r
CLONE=OSJNEd05C01
TID=Os.27166.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27166 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564116.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0413011/11AMP-dependent synthetase and ligase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class
LOC_Os03g04169Os.8412.1.S1_at11/113+1888312..1898505ATP phosphoribosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27166.1.A1_s_at--346--1851Chr03:1865694..1865718 (25 bp)
ACGAAGGAATCCATGGCCGGCGGGT
LOC_Os03g04130
Os.27166.1.A1_s_at--687--871Chr03:1865682..1865706 (25 bp)
ATGGCCGGCGGGTGGCTGCACAGCG
LOC_Os03g04130
Os.27166.1.A1_s_at--240--2691Chr03:1865463..1865487 (25 bp)
AAGCTCAAGGATGGCGCCAACGCCA
LOC_Os03g04130
Os.27166.1.A1_s_at--869--2911Chr03:1865457..1865481 (25 bp)
AAGGATGGCGCCAACGCCACGGAAG
LOC_Os03g04130
Os.27166.1.A1_s_at--22--6051Chr03:1865430..1865454 (25 bp)
GAGATCATAAGCTTTTGCCGGGAGA
LOC_Os03g04130
Os.27166.1.A1_s_at--161--431Chr03:1865427..1865451 (25 bp)
ATCATAAGCTTTTGCCGGGAGAGGC
LOC_Os03g04130
Os.27166.1.A1_s_at--227--6031Chr03:1865409..1865433 (25 bp)
GAGAGGCTGCCGCATTACATGGCGC
LOC_Os03g04130
Os.27166.1.A1_s_at--392--5291Chr03:1865314..1865338 (25 bp)
GAAGGCCCGGGCCATGGGCAGTCTC
LOC_Os03g04130
Os.27166.1.A1_s_at--425--9211Chr03:1865281..1865305 (25 bp)
TGCCAATAGTAAACTGTAATATCAT
LOC_Os03g04130
Os.27166.1.A1_s_at--162--3891Chr03:1865268..1865292 (25 bp)
CTGTAATATCATTTCTGTTGTTGGA
LOC_Os03g04130
Os.27166.1.A1_s_at--247--9211Chr03:1865213..1865237 (25 bp)
TCCAAAGATTATTAGCTGATTCGAG
LOC_Os03g04130
Target Sequence 
ACGAAGGAATCCATGGCCGGCGGGTGGCTGCACAGCGGGGACCTCGCCGTGCGCCACCCTGACGGGTACATCCAGCTCAA
GGACCGGGCCAAGGACATCATCATATCGGGCGGCGAGAACATCAGCTCGATCGAGGTGGAGTCGGTGATCTTCAGCCNCC
CGGCGGTGCTGGAGGCGGCGGTGGTGGCGAGGCCGGACGATTACTGGGGGGAAACGCCGTGCGCGTTCGTCAAGCTCAAG
GATGGCGCCAACGCCACGGAAGGNGAGATCATAAGCTTTTGCCGGGAGAGGCTGCCGCATTACATGGCGCCGAAGACGGT
GGTGTTCGATGATTTGCCCAAGACGTNGACGGGGAAGACGCAGAAGTTNGTGCTCCGGGAGAAGGCCCGGGCCATGGGCA
GTCTCACCAAGTNTGCCAATAGTAAACTGTAATATCATTTCTGTTGTTGGACATTGGATGGGATGCCGTANNANGCAGAN
TTCCAAAGATTATTAGCTGATTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27166.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis