Browse Element(s) Details


Os.21395.1.S1_at

Description gb:AK107090.1
DB_XREF= gi:32992299
TID=Os.21395.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G12, full insert sequence.
FL= gb:AK107090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g040704/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed
LOC_Os03g04040NANA3+1823179..1824168hypothetical protein
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21395.1.S1_at--1107--1291Chr03:1841586..1841610 (25 bp)
AGAGATCAAATCACCCGTCGACGAA
LOC_Os03g04070
Os.21395.1.S1_at--798--8491Chr03:1841544..1841568 (25 bp)
TGGCTAGCTGTGGATTCGATTGTAC
LOC_Os03g04070
Os.21395.1.S1_at--100--6951Chr03:1841514..1841538 (25 bp)
GTAGTAGCACCGAGATATCAATCAA
LOC_Os03g04070
Os.21395.1.S1_at--332--371Chr03:1841494..1841518 (25 bp)
ATCAATCTTTTGGTCTTCTCTCAAG
LOC_Os03g04070
Os.21395.1.S1_at--716--3331NONE
CACGTGGGATGGACAACCTGGGTAC
NONE
Os.21395.1.S1_at--548--9751NONE
TAATAGTTGAGAATCCCTTAGCATG
NONE
Os.21395.1.S1_at--827--9911NONE
TACTGAAGCCATACAGCAGGCCCTT
NONE
Os.21395.1.S1_at--1083--4971NONE
GCAGGCCCTTACAACGGTGTTCGAA
NONE
Os.21395.1.S1_at--944--8091NONE
GGACCATCGCGCGAGGCTGCACGAA
NONE
Os.21395.1.S1_at--357--8331NONE
GGCTGCACGAAGAACGCGACAGTGA
NONE
Os.21395.1.S1_at--616--4411NONE
GCCACCACGCAGAACCAAGAACAGA
NONE
Target Sequence 
AGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGATTCGATTGTACATATAGTAGTAGC
ACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAGATAANANNANNNNNNNNNACTTGACTAAAAAAAAAAACAACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAACACGTGGGATGGACAACCTGGGTACC
AATAATAGTTGAGAATCCCTTAGCATGATATAGAAAGGCGAGAGGATCAAAGTGATTATGGAGATGGGGAATGGAACGGT
ACTGAAGCCATACAGCAGGCCCTTACAACGGTGTTCGAACCAGACCAAGGGGACCATCGCGCGAGGCTGCACGAAGAACG
CGACAGTGACGAAGCGGGACCAGAGGAAACAGCCAGAGCACCAGCTACGCTCACCCCCGCGGCGAGCACAACACAGCCAC
CACGCAGAACCAAGAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis