Browse Element(s) Details


Os.23253.1.S1_at

Description gb:AK122069.1
DB_XREF= gi:37991715
TID=Os.23253.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117I10, full insert sequence.
FL= gb:AK104997.2 gb:AK122069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0405011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed
LOC_Os03g04040NANA3+1823179..1824168hypothetical protein
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23253.1.S1_at--375--10031Chr03:1836317..1836341 (25 bp)
TAGACGGAGCTTATGCCACCTCATG
LOC_Os03g04050
Os.23253.1.S1_at--140--8871Chr03:1836353..1836377 (25 bp)
TGATGCTGCCCTCCGGGATGCAATG
LOC_Os03g04050
Os.23253.1.S1_at--348--6331Chr03:1836369..1836393 (25 bp)
GATGCAATGCAAGCGCAGTGCGTAT
LOC_Os03g04050
Os.23253.1.S1_at--5--1131Chr03:1836385..1836409 (25 bp)
AGTGCGTATACCCTGATTGGCCAAC
LOC_Os03g04050
Os.23253.1.S1_at--933--11Chr03:1836400..1836424 (25 bp)
ATTGGCCAACCGCATTCTATATGCA
LOC_Os03g04050
Os.23253.1.S1_at--122--2691Chr03:1836424..1836448 (25 bp)
AAGCTGTTGCGCTCTCAAAGTTAAA
LOC_Os03g04050
Os.23253.1.S1_at--592--2111Chr03:1836469..1836493 (25 bp)
ACATGTTGAATGAAGCTTCGCAGCT
LOC_Os03g04050
Os.23253.1.S1_at--623--9091Chr03:1836536..1836560 (25 bp)
TGCTCAGTCTCCTTTGCGGCTCAAA
LOC_Os03g04050
Os.23253.1.S1_at--513--10351Chr03:1836563..1836587 (25 bp)
TTTATGTTGAGACGTGCTGCTCTTC
LOC_Os03g04050
Os.23253.1.S1_at--585--8191Chr03:1836638..1836662 (25 bp)
GGAAGGTGCTGCAGAATCCTTTTTT
LOC_Os03g04050
Os.23253.1.S1_at--405--10391Chr03:1836663..1836687 (25 bp)
TTTTCTCTTTCGGACCAGATGTTGT
LOC_Os03g04050
Target Sequence 
TAGACGGAGCTTATGCCACCTCATGTCTGACCAACCTGATGCTGCCCTCCGGGATGCAATGCAAGCGCAGTGCGTATACC
CTGATTGGCCAACCGCATTCTATATGCAAGCTGTTGCGCTCTCAAAGTTAAATATGCAGAGTGATGCTATGGACATGTTG
AATGAAGCTTCGCAGCTAGAAGAGAAGAGACAAGAGCGTNTNTGGTCTAAAGATGCGTCTGCTCAGTCTCCTTTGCGGCT
CAAAGGTTTATGTTGAGACGTGCTGCTCTTCCTTCAGAAAATTGTGATACATTCCAGGTTAAAGAGTTGGGTGTAATGGG
GGGAAGGTGCTGCAGAATCCTTTTTTTTTTTCTCTTTCGGACCAGATGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis