Browse Element(s) Details


OsAffx.31288.1.S1_at

Description tigr:9639.m03058
TID=OsAffx.31288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3404011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein
LOC_Os11g34030OsAffx.7291.1.S1_at11/1111+19387263..19388599hypothetical protein
LOC_Os11g34040OsAffx.31288.1.S1_at11/1111+19392318..19392814hypothetical protein
LOC_Os11g34050NANA11+19402819..19406076retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34060NANA11+19409245..19410883retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31288.1.S1_at--623--2371Chr11:19392371..19392395 (25 bp)
AAACTGCGTGATCGGCCTCTCCTCG
LOC_Os11g34040
OsAffx.31288.1.S1_at--395--4711Chr11:19392411..19392435 (25 bp)
GCTGCAGGACCGTTTCGGTCCCGCA
LOC_Os11g34040
OsAffx.31288.1.S1_at--51--4531Chr11:19392451..19392475 (25 bp)
GCGCCGTAGGACCAACTCGGTTCCG
LOC_Os11g34040
OsAffx.31288.1.S1_at--169--6931Chr11:19392456..19392480 (25 bp)
GTAGGACCAACTCGGTTCCGCACTT
LOC_Os11g34040
OsAffx.31288.1.S1_at--462--7891Chr11:19392469..19392493 (25 bp)
GGTTCCGCACTTTCAATCCGCGCGA
LOC_Os11g34040
OsAffx.31288.1.S1_at--1058--10471Chr11:19392480..19392504 (25 bp)
TTCAATCCGCGCGACCGAGTAGGTC
LOC_Os11g34040
OsAffx.31288.1.S1_at--9--5831Chr11:19392492..19392516 (25 bp)
GACCGAGTAGGTCCCGCAATGCCAA
LOC_Os11g34040
OsAffx.31288.1.S1_at--221--6071Chr11:19392496..19392520 (25 bp)
GAGTAGGTCCCGCAATGCCAATCCG
LOC_Os11g34040
OsAffx.31288.1.S1_at--502--6771Chr11:19392551..19392575 (25 bp)
GTTACCATCTTGTTCCCGCATATCC
LOC_Os11g34040
OsAffx.31288.1.S1_at--139--431Chr11:19392557..19392581 (25 bp)
ATCTTGTTCCCGCATATCCAACGTG
LOC_Os11g34040
OsAffx.31288.1.S1_at--952--10791Chr11:19392560..19392584 (25 bp)
TTGTTCCCGCATATCCAACGTGCGG
LOC_Os11g34040
Target Sequence 
AAACTGCGTGATCGGCCTCTCCTCGATGCCGCACGTCGGGGCTGCAGGACCGTTTCGGTCCCGCACCTGCTGGCACAGCC
GCGCCGTAGGACCAACTCGGTTCCGCACTTTCAATCCGCGCGACCGAGTAGGTCCCGCAATGCCAATCCGCGCCACCGCG
TTCCCGCGCTGCCGCTCCGCGTTACCATCTTGTTCCCGCATATCCAACGTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis