Browse Element(s) Details


OsAffx.31335.1.S1_at

Description tigr:9639.m03335
TID=OsAffx.31335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3690011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36850NANA11+21238490..21239782retrotransposon protein, putative, unclassified
LOC_Os11g36860NANA11+21240290..21243225retrotransposon protein, putative, unclassified
LOC_Os11g36870NANA11+21244733..21249981retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.4222.1.S1_at3/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.21100.1.S1_at2/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36890OsAffx.19202.1.S1_at10/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.14983.1.S1_a_at2/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.51591.1.S1_at1/1111+21259914..21262345hypothetical protein
LOC_Os11g36900OsAffx.31335.1.S1_at11/1111+21264128..21264409hypothetical protein
LOC_Os11g36910OsAffx.19203.1.S1_at11/1111+21267182..21267544hypothetical protein
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31335.1.S1_at--590--8031Chr11:21264184..21264208 (25 bp)
GGAGTCGTCGCTGCCCAACGTAGAG
LOC_Os11g36900
OsAffx.31335.1.S1_at--524--1891Chr11:21264201..21264225 (25 bp)
ACGTAGAGGCGTTCGACACGACTGC
LOC_Os11g36900
OsAffx.31335.1.S1_at--66--1331Chr11:21264205..21264229 (25 bp)
AGAGGCGTTCGACACGACTGCGCTT
LOC_Os11g36900
OsAffx.31335.1.S1_at--399--10631Chr11:21264212..21264236 (25 bp)
TTCGACACGACTGCGCTTGTGGAGG
LOC_Os11g36900
OsAffx.31335.1.S1_at--607--5751Chr11:21264250..21264274 (25 bp)
GACGTCGCCATCTTTCCTACTAGTG
LOC_Os11g36900
OsAffx.31335.1.S1_at--990--431Chr11:21264259..21264283 (25 bp)
ATCTTTCCTACTAGTGCTCGAGTTT
LOC_Os11g36900
OsAffx.31335.1.S1_at--195--3711Chr11:21264269..21264293 (25 bp)
CTAGTGCTCGAGTTTAGCATCCCGA
LOC_Os11g36900
OsAffx.31335.1.S1_at--1024--1191Chr11:21264279..21264303 (25 bp)
AGTTTAGCATCCCGAGGAGCTCGGT
LOC_Os11g36900
OsAffx.31335.1.S1_at--740--8051Chr11:21264294..21264318 (25 bp)
GGAGCTCGGTGTCAGGCGAGAACGA
LOC_Os11g36900
OsAffx.31335.1.S1_at--647--8711Chr11:21264345..21264369 (25 bp)
TGTCGCCCTACAGCAGTCGGTCGGT
LOC_Os11g36900
OsAffx.31335.1.S1_at--508--9871Chr11:21264353..21264377 (25 bp)
TACAGCAGTCGGTCGGTTGACAAGT
LOC_Os11g36900
Target Sequence 
GGAGTCGTCGCTGCCCAACGTAGAGGCGTTCGACACGACTGCGCTTGTGGAGGAGGGGTCCAGCTCGACGTCGCCATCTT
TCCTACTAGTGCTCGAGTTTAGCATCCCGAGGAGCTCGGTGTCAGGCGAGAACGACGACGAGGAAGAGGAGAAGGCCACC
CTGTCGCCCTACAGCAGTCGGTCGGTTGACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis