Browse Element(s) Details


OsAffx.31352.1.S1_at

Description tigr:9639.m03426
TID=OsAffx.31352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3780011/11Mla1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37780OsAffx.19222.1.S1_at11/1111+21865655..21869369NB-ARC domain containing protein
LOC_Os11g37790OsAffx.7330.1.S1_at11/1111+21881096..21883438NB-ARC domain containing protein
LOC_Os11g37800OsAffx.31352.1.S1_at11/1111+21883881..21888453Mla1, putative
LOC_Os11g37810NANA11+21892814..21893353hypothetical protein
LOC_Os11g37820NANA11+21895539..21901684retrotransposon protein, putative, unclassified
LOC_Os11g37830NANA11+21902319..21905509retrotransposon protein, putative, unclassified
LOC_Os11g37840OsAffx.25517.1.S1_at11/1111+21912179..21912912hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31352.1.S1_at--996--8251Chr11:21884191..21884215 (25 bp)
GGCAGCTCCAGCAGTTATCTATAAA
LOC_Os11g37800
OsAffx.31352.1.S1_at--19--10671Chr11:21884227..21884251 (25 bp)
TTCCTCGGCTACCAGTGTGGATGAA
LOC_Os11g37800
OsAffx.31352.1.S1_at--1083--6311Chr11:21884246..21884270 (25 bp)
GATGAACTCCATATGCATCCCTCAT
LOC_Os11g37800
OsAffx.31352.1.S1_at--504--3751Chr11:21884266..21884290 (25 bp)
CTCATCTGTCTTGCATGGACCTTAA
LOC_Os11g37800
OsAffx.31352.1.S1_at--193--791Chr11:21884320..21884344 (25 bp)
ATGTGATTGCGAGGTTGCCGGCTCT
LOC_Os11g37800
OsAffx.31352.1.S1_at--380--4611Chr11:21884347..21884371 (25 bp)
GCGAGGTTGTCCTGCAATTTATTTG
LOC_Os11g37800
OsAffx.31352.1.S1_at--24--8151Chr11:21886321..21886345 (25 bp)
GGACAATGATGTTACGCACCAATCT
LOC_Os11g37800
OsAffx.31352.1.S1_at--480--3191Chr11:21886340..21886364 (25 bp)
CAATCTTAATTACCGGCCCTATGCA
LOC_Os11g37800
OsAffx.31352.1.S1_at--1012--10291Chr11:21886368..21886392 (25 bp)
TTTCGTTCATTCGTGCTGGTAGCCA
LOC_Os11g37800
OsAffx.31352.1.S1_at--375--9131Chr11:21888304..21888328 (25 bp)
TGCTGTCGAGCGTCTTGCCACAGAC
LOC_Os11g37800
OsAffx.31352.1.S1_at--1140--10051Chr11:21888368..21888392 (25 bp)
TAGGGCCTACGATAGCGGCGACGAC
LOC_Os11g37800
Target Sequence 
GGCAGCTCCAGCAGTTATCTATAAATGGGATCTGCCTTCCTCGGCTACCAGTGTGGATGAACTCCATATGCATCCCTCAT
CTGTCTTGCATGGACCTTAAAGTGTCAACTATTGAAGCATCAGACCTAGATGTGATTGCGAGGTTGCCGGCTCTTTGCGA
GGTTGTCCTGCAATTTATTTGGACCGATATAGAAAGCTGGACAATGATGTTACGCACCAATCTTAATTACCGGCCCTATG
CACTCTTTCGTTCATTCGTGCTGGTAGCCAGGACAGCGACGGCGGCGGCTGCTCCCGAGCCCTCCCACGCAGATGGCGTT
GAGGATAGCGGCGGCGGCGGCTGCAAGTTCCAAGCCCTCCTGTCGCGGATGGGGTCGAGGATAGTGATGGCGACGGTGGC
TCCCGAGCCCTCCCTCATGGATGGCGTTGAGGACGGCTGCTGTCGAGCGTCTTGCCACAGACGGCTGCGGCGGCGATGGC
TCCCAAGCCTCCCGCCGCGGATAGGGCCTACGATAGCGGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis