Browse Element(s) Details


OsAffx.31384.1.S1_at

Description tigr:9639.m03595
TID=OsAffx.31384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3940011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39360Os.52546.1.S1_at10/1111+22925937..22928601pentatricopeptide, putative, expressed
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31384.1.S1_at--481--871Chr11:22952696..22952720 (25 bp)
ATGGCCGGTGCCAAGAGTAGCGCAA
LOC_Os11g39400
OsAffx.31384.1.S1_at--303--5431Chr11:22952731..22952755 (25 bp)
GACAACCGACGGCTTCGCAGTTCGT
LOC_Os11g39400
OsAffx.31384.1.S1_at--475--3831Chr11:22952768..22952792 (25 bp)
CTGCGGTGTGATGCTCGGTGTTCAA
LOC_Os11g39400
OsAffx.31384.1.S1_at--790--10511Chr11:22952788..22952812 (25 bp)
TTCAACGGTGTGTTCGACCATGGCA
LOC_Os11g39400
OsAffx.31384.1.S1_at--468--6111Chr11:22952822..22952846 (25 bp)
GAGTCCACGCGATGGCATGCTCTGT
LOC_Os11g39400
OsAffx.31384.1.S1_at--718--3431Chr11:22952874..22952898 (25 bp)
CAGAGGCGCATCTCGTGCGGATAGA
LOC_Os11g39400
OsAffx.31384.1.S1_at--239--6491Chr11:22952893..22952917 (25 bp)
GATAGAACACCCCAATCGGCTTGTG
LOC_Os11g39400
OsAffx.31384.1.S1_at--781--3211Chr11:22952928..22952952 (25 bp)
CAAGTCGGCAATGGCGGTGTTCATC
LOC_Os11g39400
OsAffx.31384.1.S1_at--792--432Chr11:22953029..22953053 (25 bp)
ATCTTCGAGTTATTACCCTTCTTCT
LOC_Os11g39400
OsAffx.31384.1.S1_at--753--771Chr11:22953951..22953975 (25 bp)
ATGTCCCAGCATGCCGCATGGATGA
LOC_Os11g39400
OsAffx.31384.1.S1_at--536--6251Chr11:22953974..22953998 (25 bp)
GATGGTCACGATGAAGGCACCACCA
LOC_Os11g39400
Target Sequence 
ATGGCCGGTGCCAAGAGTAGCGCAAGCGGCGGAGCGACAACCGACGGCTTCGCAGTTCGTCGCTTGGCAGCCCTGCGGTG
TGATGCTCGGTGTTCAACGGTGTGTTCGACCATGGCAGCCAACGGCGAGTCCACGCGATGGCATGCTCTGTTGCCTGTCC
CCGTCTGGCACTGTGTGGCAGAGGCGCATCTCGTGCGGATAGAACACCCCAATCGGCTTGTGCCGGTGACTCCAAGTCGG
CAATGGCGGTGTTCATCGGGAGTCAAAGAAAACCAGAACGAGAACACAGAGAGGAATTCGTTTTCGCGATTGAATCAGCG
GGATGCAATGCAAATCTTCGAGTTATTACCCTTCTTCTTTCTCGGTCTCCGCTTCGCCCATGTCCCAGCATGCCGCATGG
ATGATGGTCACGATGAAGGCACCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis