Browse Element(s) Details


OsAffx.31423.2.S1_at

Description tigr:9639.m03789
TID=OsAffx.31423.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4125011/11expressed protein
LOC_Os11g412404/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41210Os.52367.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7371.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7039.1.S1_at1/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41230OsAffx.31423.1.S1_at11/1111+24223130..24223696MATH domain containing protein
LOC_Os11g41240OsAffx.31423.1.S1_at11/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41240OsAffx.31423.2.S1_at4/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41250OsAffx.31423.2.S1_at11/1111+24228912..24229355expressed protein
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g41290Os.55095.1.S1_at11/1111+24249175..24250275BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31423.2.S1_at--732--4391Chr11:24229147..24229171 (25 bp)
GCCACTCGTGGCGTCCCCAGCTGTA
LOC_Os11g41250
OsAffx.31423.2.S1_at--1004--7231Chr11:24229159..24229183 (25 bp)
GTCCCCAGCTGTACCCCAACGGCAA
LOC_Os11g41250
OsAffx.31423.2.S1_at--296--1431Chr11:24229183..24229207 (25 bp)
AGAACAAGAAGCACAGGGACCACAT
LOC_Os11g41250
OsAffx.31423.2.S1_at--577--1451Chr11:24229189..24229213 (25 bp)
AGAAGCACAGGGACCACATCGGCGT
LOC_Os11g41250
OsAffx.31423.2.S1_at--562--2731Chr11:24229191..24229215 (25 bp)
AAGCACAGGGACCACATCGGCGTCT
LOC_Os11g41250
OsAffx.31423.2.S1_at--782--1491Chr11:24229192..24229216 (25 bp)
AGCACAGGGACCACATCGGCGTCTT
LOC_Os11g41250
OsAffx.31423.2.S1_at--291--2151Chr11:24229252..24229276 (25 bp)
ACAGCGACGGCCACGGTTCAGCCTG
LOC_Os11g41250
OsAffx.31423.2.S1_at--1084--4092Chr11:24229256..24229280 (25 bp)
CGACGGCCACGGTTCAGCCTGGTTG
LOC_Os11g41250
OsAffx.31423.2.S1_at--674--6752Chr11:24229267..24229291 (25 bp)
GTTCAGCCTGGTTGATGTCGCCGGC
LOC_Os11g41250
OsAffx.31423.2.S1_at--392--9672Chr11:24229269..24229293 (25 bp)
TCAGCCTGGTTGATGTCGCCGGCAA
LOC_Os11g41250
OsAffx.31423.2.S1_at--511--4492Chr11:24229300..24229324 (25 bp)
GCCGTCGCGGGACGCCGGAGTTCAT
LOC_Os11g41250
Target Sequence 
GCCACTCGTGGCGTCCCCAGCTGTACCCCAACGGCAAGAACAAGAAGCACAGGGACCACATCGGCGTCTTCCTCCAGCTC
GCCGCCGCCGGCGGCCACCCTAGCGACAGCGACGGCCACGGTTCAGCCTGGTTGATGTCGCCGGCAAGGCGGCGCCGTCG
CGGGACGCCGGAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31423.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis