Browse Element(s) Details


OsAffx.31426.1.S1_at

Description tigr:9639.m03796
TID=OsAffx.31426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4132010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41300OsAffx.7373.1.S1_x_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.7373.1.S1_at11/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41300OsAffx.31424.1.S1_x_at2/1111+24254812..24255888BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.7374.1.S1_at11/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41310OsAffx.31424.1.S1_x_at1/1111+24257358..24260546BTB/POZ domain containing protein
LOC_Os11g41320OsAffx.31426.1.S1_at10/1111+24278979..24280090hypothetical protein
LOC_Os11g41330OsAffx.31427.1.S1_at11/1111+24283560..24283802hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31426.1.S1_at--801--4431Chr11:24279010..24279034 (25 bp)
GCCTACCGATCTCCGACCGAGGTTT
LOC_Os11g41320
OsAffx.31426.1.S1_at--715--3371Chr11:24279044..24279068 (25 bp)
CACCATGCCGATTTCCACAATTGAA
LOC_Os11g41320
OsAffx.31426.1.S1_at--159--10671Chr11:24279056..24279080 (25 bp)
TTCCACAATTGAAAGCACGGCCGAA
LOC_Os11g41320
OsAffx.31426.1.S1_at--1130--3091Chr11:24279061..24279085 (25 bp)
CAATTGAAAGCACGGCCGAAGAGTT
LOC_Os11g41320
OsAffx.31426.1.S1_at--905--11Chr11:24279107..24279131 (25 bp)
ATTGGCTGACAAGACTTTGGGCTTC
LOC_Os11g41320
OsAffx.31426.1.S1_at--1021--2731Chr11:24279117..24279141 (25 bp)
AAGACTTTGGGCTTCTACTGCTTGT
LOC_Os11g41320
OsAffx.31426.1.S1_at--229--7591Chr11:24279125..24279149 (25 bp)
GGGCTTCTACTGCTTGTTCTGTAAC
LOC_Os11g41320
OsAffx.31426.1.S1_at--981--9911Chr11:24279132..24279156 (25 bp)
TACTGCTTGTTCTGTAACGCCTGGT
LOC_Os11g41320
OsAffx.31426.1.S1_at--568--4931Chr11:24279136..24279160 (25 bp)
GCTTGTTCTGTAACGCCTGGTTTCC
LOC_Os11g41320
OsAffx.31426.1.S1_at--47--8751Chr11:24279144..24279168 (25 bp)
TGTAACGCCTGGTTTCCTCGTCTCT
LOC_Os11g41320
OsAffx.31426.1.S1_at--672--4291NONE
CCTCGTCTCTTCGTCAGATATAATT
NONE
Target Sequence 
GCCTACCGATCTCCGACCGAGGTTTTCCTGCTTCCACCATGCCGATTTCCACAATTGAAAGCACGGCCGAAGAGTTGGGG
CTGGAAGATTGGAGGAGATTGGCTGACAAGACTTTGGGCTTCTACTGCTTGTTCTGTAACGCCTGGTTTCCTCGTCTCTT
CGTCAGATATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis