Browse Element(s) Details


OsAffx.31444.1.S1_at

Description tigr:9639.m03936
TID=OsAffx.31444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4266011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42630NANA11+25166271..25172697retrotransposon protein, putative, unclassified
LOC_Os11g42640OsAffx.7389.1.S1_at11/1111+25173265..25176400hypothetical protein
LOC_Os11g42650Os.45173.5.S1_x_at4/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.3.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.2.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.45173.1.S1_x_at1/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42660OsAffx.31444.1.S1_at11/1111+25193894..25198668Leucine Rich Repeat family protein, expressed
LOC_Os11g42670OsAffx.19337.1.S1_at11/1111+25201725..25202292hypothetical protein
LOC_Os11g42680OsAffx.19338.1.S1_at11/1111+25207525..25208238hypothetical protein
LOC_Os11g42690OsAffx.19339.1.S1_at11/1111+25210018..25210251hypothetical protein
LOC_Os11g42700OsAffx.19340.3.S1_at11/1111+25219226..25220437hypothetical protein
LOC_Os11g42710NANA11+25222702..25228060retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31444.1.S1_at--23--2272Chr11:25197628..25197652 (25 bp)
AAATCTTGGGATCGACAACCTTCAA
LOC_Os11g42660
OsAffx.31444.1.S1_at--678--31Chr11:25197665..25197689 (25 bp)
ATTGTGCTCAAAGGCGACTGTGACC
LOC_Os11g42660
OsAffx.31444.1.S1_at--363--3031Chr11:25197692..25197716 (25 bp)
AATCGCATCAGGCTATCCGTCAAAG
LOC_Os11g42660
OsAffx.31444.1.S1_at--739--9691Chr11:25197711..25197735 (25 bp)
TCAAAGCGAATCCATGCCATCCTAA
LOC_Os11g42660
OsAffx.31444.1.S1_at--1025--6071Chr11:25198257..25198281 (25 bp)
GAGTAGCACCTCATTGAACCAAGAC
LOC_Os11g42660
OsAffx.31444.1.S1_at--356--3791Chr11:25198294..25198318 (25 bp)
CTCGGTGAGTTGTCTAGCTTATGCT
LOC_Os11g42660
OsAffx.31444.1.S1_at--563--4891Chr11:25198310..25198334 (25 bp)
GCTTATGCTATTTCAGGCTCAGACA
LOC_Os11g42660
OsAffx.31444.1.S1_at--821--1131Chr11:25198391..25198415 (25 bp)
AGTCTTTTCTTGTTGAGGACCCCAG
LOC_Os11g42660
OsAffx.31444.1.S1_at--556--2851Chr11:25198489..25198513 (25 bp)
AAGTCTCTTCATAGGCTTGGAGGCC
LOC_Os11g42660
OsAffx.31444.1.S1_at--958--3471Chr11:25198548..25198572 (25 bp)
CAGGTTCCTTGTTTCATTCTCTGAA
LOC_Os11g42660
OsAffx.31444.1.S1_at--4--5591Chr11:25198590..25198614 (25 bp)
GAAATGTTCTCTAGCAAGCTCACCT
LOC_Os11g42660
Target Sequence 
AAATCTTGGGATCGACAACCTTCAAGGACTGAAAGAGATTGTGCTCAAAGGCGACTGTGACCTGAATCGCATCAGGCTAT
CCGTCAAAGCGAATCCATGCCATCCTAACCTTACACACACTCCAACTCTCAACTCTCCAACAATCCAACCCGGTCTTAAT
AAACTTGCCAAGGTTACTTTGAGTAGCACCTCATTGAACCAAGACAATTTGAAGGTTCTCGGTGAGTTGTCTAGCTTATG
CTATTTCAGGCTCAGACACAATGGATACACAGGTGAAAAACTCACCTTCAAGAAGGATGAATTCAAAAATCTCAAGTCTT
TTCTTGTTGAGGACCCCAGCATGATCAGCATCGAATTTCAGAAGGGAGCAGCTGCAGAGCTCGAGAAGATTGTATTCTCC
TCCACCAACATAAAGTCTCTTCATAGGCTTGGAGGCCTTCCAAAATTGAAAGAGCCTGAGTTGAAGAGCAACAGGTTCCT
TGTTTCATTCTCTGAAGAGGGAGAAACTCATAAGAAATGTTCTCTAGCAAGCTCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis