Browse Element(s) Details


OsAffx.31445.1.S1_x_at

Description tigr:9633.m01358
TID=OsAffx.31445.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1538011/11lipase class 3 family protein, putative
LOC_Os02g125202/11lipase class 3 family protein, putative
LOC_Os01g311102/11CRS2-associated factor 1, putative, expressed
LOC_Os11g427302/11lipase class 3 family protein, putative
LOC_Os03g504101/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15430Os.27691.1.S1_x_at1/115+8701784..8706022retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15440OsAffx.4346.1.S1_at11/115+8708121..8710221hypothetical protein
LOC_Os05g15440Os.56292.1.S1_x_at1/115+8708121..8710221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31445.1.S1_x_at--601--9333Chr11:25236551..25236575 (25 bp)
TCGCCGTGTGCAGGCTAGGACTCGC
LOC_Os11g42730
OsAffx.31445.1.S1_x_at--615--7194Chr11:25236732..25236756 (25 bp)
GTGCAGGCTCGTGTTCGTCGGCCAC
LOC_Os11g42730
OsAffx.31445.1.S1_x_at--430--6871Chr05:8685421..8685445 (25 bp)
GTATTGCCAAAGCTTCCTATTGGAC
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--395--5912Chr05:8685461..8685485 (25 bp)
GAGCTCATTGAGATGTACCCTGACA
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--682--3052Chr05:8685504..8685528 (25 bp)
AATCTCCAGATGTACCAGAAGCTTT
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--590--10491Chr05:8685527..8685551 (25 bp)
TTAACTTGTCTAACGGCCAACAGTG
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--1058--3711Chr05:8685536..8685560 (25 bp)
CTAACGGCCAACAGTGATGAGATTC
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--35--6311Chr05:8685551..8685575 (25 bp)
GATGAGATTCAGTACCGGGCTGCTC
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--136--9111Chr05:8685571..8685595 (25 bp)
TGCTCCTGCTCACGATGTGGAAGCT
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--632--8651Chr05:8685586..8685610 (25 bp)
TGTGGAAGCTCGGAACAATCTCCCC
LOC_Os05g15380
OsAffx.31445.1.S1_x_at--607--6671Chr05:8685614..8685638 (25 bp)
GTTGCTCCAGCTCGCGATGCAGTAC
LOC_Os05g15380
Target Sequence 
TCGCCGTGTGCAGGCTAGGACTCGCGCGGCTCGAGGACTACCGCGTGCTCCTCGACGCCGGNGGGTCCGAGCCACTCGCG
GGCGGCCACGAGCACCGCGGGCTCCTCCGCGCCNCCGTGTGGCTGCTCGACCGAGAGGGCACCGCGATCCGGCGGATGGT
GGCAGAGGTCGGGCTGGCGGGGTGCAGGCTCGTGTTCGTCGGCCACTCGCTCGGCGCNNGGGNNNNNGANNNNNNNCNNN
NNNNNNNNNNGTATTGCCAAAGCTTCCTATTGGACAATAGTGAAAACGGAGAGCTCATTGAGATGTACCCTGACAGATGT
GGAAGCTCAGAACAATCTCCAGATGTACCAGAAGCTTTAACTTGTCTAACGGCCAACAGTGATGAGATTCAGTACCGGGC
TGCTCCTGCTCACGATGTGGAAGCTCGGAACAATCTCCCCGCTGTTGCTCCAGCTCGCGATGCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31445.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis