Browse Element(s) Details


OsAffx.31477.1.S1_at

Description tigr:9639.m04147
TID=OsAffx.31477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161559 serinethreonine kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4469011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44650OsAffx.31476.1.S1_at11/1111+26492947..26494218hypothetical protein
LOC_Os11g44660OsAffx.19373.1.S1_at11/1111+26500722..26502889Protein kinase domain containing protein, expressed
LOC_Os11g44670NANA11+26504424..26507680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44680Os.52661.1.S1_at9/1111+26508551..26514533expressed protein
LOC_Os11g44690OsAffx.31477.1.S1_at11/1111+26517623..26520782Protein kinase domain containing protein, expressed
LOC_Os11g44700OsAffx.7414.1.S1_at9/1111+26523038..26527248expressed protein
LOC_Os11g44710Os.47999.3.A1_at6/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.3.A1_x_at5/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.45173.1.S1_x_at3/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.2.A1_x_at2/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710OsAffx.20733.1.A1_x_at1/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31477.1.S1_at--89--9831Chr11:26519876..26519900 (25 bp)
TACACAAGCTATGCGAACCACGTAT
LOC_Os11g44690
OsAffx.31477.1.S1_at--47--331Chr11:26519929..26519953 (25 bp)
ATACTCCTGGATGCTTCTCTGAAAC
LOC_Os11g44690
OsAffx.31477.1.S1_at--716--9831Chr11:26520003..26520027 (25 bp)
TAAAGACTGCACTGGCGTCGTGGTG
LOC_Os11g44690
OsAffx.31477.1.S1_at--543--6191Chr11:26520379..26520403 (25 bp)
GAGGAAAACACATCTCTCCATCTTC
LOC_Os11g44690
OsAffx.31477.1.S1_at--531--9691Chr11:26520402..26520426 (25 bp)
TCACTGGCGCTTTCTGATGAATCTC
LOC_Os11g44690
OsAffx.31477.1.S1_at--376--8851Chr11:26520416..26520440 (25 bp)
TGATGAATCTCACAACTACGGGCCT
LOC_Os11g44690
OsAffx.31477.1.S1_at--789--8191Chr11:26520596..26520620 (25 bp)
GGAATTGATCGATCCGTCGCTGCAC
LOC_Os11g44690
OsAffx.31477.1.S1_at--977--8691Chr11:26520670..26520694 (25 bp)
TGTGCGTTCAGCAGAGTCCCGAGGA
LOC_Os11g44690
OsAffx.31477.1.S1_at--379--4711Chr11:26520695..26520719 (25 bp)
GCGGCCAAGCATGTGGGATGTTCTT
LOC_Os11g44690
OsAffx.31477.1.S1_at--792--7991Chr11:26520710..26520734 (25 bp)
GGATGTTCTTCTGATGCTGAGCTGC
LOC_Os11g44690
OsAffx.31477.1.S1_at--519--5891Chr11:26520728..26520752 (25 bp)
GAGCTGCGACAGTGTAATCTTACCA
LOC_Os11g44690
Target Sequence 
TACACAAGCTATGCGAACCACGTATTATTCACGGGGATTTGAAACCAGGCAACATACTCCTGGATGCTTCTCTGAAACCG
AAGATTTGTGACTTCGGCATTTCAAAAGCACTTAAGGCAGATGCGGATAAAGACTGCACTGGCGTCGTGGTGGGCTCACG
TGGGTTTATGGCCCCTGAATATAAACAGGGAGGCTGTCTCTCTCTCCAGACAGATGTGTATAGCTTTGGCGCTACGCTTC
TTCAGATCATTAGAGGAAAACACATCTCTCCATCTTCACTGGCGCTTTCTGATGAATCTCACAACTACGGGCCTCTAAAT
AAGTGGGCGTGGAACTTGTGGAAAGACGGAAACCTGATGGAATTGATCGATCCGTCGCTGCACGATGAGAATCATGCTTC
TGAGATAAAGAGATGGGTTCAGATAGCGCTGCTGTGCGTTCAGCAGAGTCCCGAGGAGCGGCCAAGCATGTGGGATGTTC
TTCTGATGCTGAGCTGCGACAGTGTAATCTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis