Browse Element(s) Details


OsAffx.31497.1.S1_at

Description tigr:9639.m04242
TID=OsAffx.31497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4560011/11rust resistance protein Rp1-dp8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed
LOC_Os11g45620OsAffx.31498.1.S1_at11/1111+27096534..27098953Lr21, putative
LOC_Os11g45630NANA11+27100216..27100775hypothetical protein
LOC_Os11g45640OsAffx.19394.1.S1_at11/1111+27102090..27102851hypothetical protein
LOC_Os11g45650NANA11+27105230..27108548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45660Os.46053.2.S1_x_at10/1111+27109751..27112983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.47463.1.S1_x_at6/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.14491.2.S1_x_at4/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31497.1.S1_at--439--251Chr11:27090584..27090608 (25 bp)
ATATCTCACTGAGCTGACGCTACGG
LOC_Os11g45600
OsAffx.31497.1.S1_at--686--7531Chr11:27090555..27090579 (25 bp)
GTGGCACTGACGAACGCTGCTCGAA
LOC_Os11g45600
OsAffx.31497.1.S1_at--624--1611Chr11:27090507..27090531 (25 bp)
AGCTGTTCTTTCCACCTGTAACAGA
LOC_Os11g45600
OsAffx.31497.1.S1_at--713--1271Chr11:27090483..27090507 (25 bp)
AGATCAAGCAACATCAACCTCCAGA
LOC_Os11g45600
OsAffx.31497.1.S1_at--513--2491Chr11:27090339..27090363 (25 bp)
AACAGGAACAAGATCGCCCGGCATT
LOC_Os11g45600
OsAffx.31497.1.S1_at--125--4551Chr11:27090324..27090348 (25 bp)
GCCCGGCATTGCAGAATCTTATGTT
LOC_Os11g45600
OsAffx.31497.1.S1_at--121--3831Chr11:27090248..27090272 (25 bp)
CTGCCTGCATACACTGTCAGTTACA
LOC_Os11g45600
OsAffx.31497.1.S1_at--616--1391Chr11:27090224..27090248 (25 bp)
AGACTGCAGCTGGAACTATTTGCCT
LOC_Os11g45600
OsAffx.31497.1.S1_at--1123--9151Chr11:27090204..27090228 (25 bp)
TGCCTGTCAAATTGTGCCGCCTGAA
LOC_Os11g45600
OsAffx.31497.1.S1_at--121--5211Chr11:27090169..27090193 (25 bp)
GAATTGATCGTCCAGGAGTGTCCCA
LOC_Os11g45600
OsAffx.31497.1.S1_at--852--5791Chr11:27090059..27090083 (25 bp)
GACCCCTGGACATCCAAATTGGCGA
LOC_Os11g45600
Target Sequence 
ATATCTCACTGAGCTGACGCTACGGTGGGGTGGCACTGACGAACGCTGCTCGAAGAAAGCGTTGGAGTCATACAAGAAGC
TGTTCTTTCCACCTGTAACAGAGATCAAGCAACATCAACCTCCAGAACTTCAGGAGGAGGTTCTTGAGGGGCTCCGTCCA
CCGTCGGGGATTACAGTACTTTGCATCAGGGATTACGGTGGTGTGATATACCCAAGCTGGTTGACAGGAGACGGTTGCGA
CAAGGAACAGGAACAAGATCGCCCGGCATTGCAGAATCTTATGTTCTGGAGTTGCAAGGGATCGAGTGATCCCCCAAAGA
TTGGTGAATTCTTCACCTGCCTGCATACACTGTCAGTTACAGACTGCAGCTGGAACTATTTGCCTGTCAAATTGTGCCGC
CTGAAAACACTCAGGGAATTGATCGTCCAGGAGTGTCCCAACATGATGACACTGCCCAAGCTTCCCCAATCGCTCAAGAG
CATTGTAATCTCTGGTTGCCACCCTTCTCTTGCGGACACCTGTCTGACCCCTGGACATCCAAATTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis