Browse Element(s) Details


OsAffx.31498.1.S1_at

Description tigr:9639.m04244
TID=OsAffx.31498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR class RGA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4562011/11Lr21, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed
LOC_Os11g45620OsAffx.31498.1.S1_at11/1111+27096534..27098953Lr21, putative
LOC_Os11g45630NANA11+27100216..27100775hypothetical protein
LOC_Os11g45640OsAffx.19394.1.S1_at11/1111+27102090..27102851hypothetical protein
LOC_Os11g45650NANA11+27105230..27108548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45660Os.46053.2.S1_x_at10/1111+27109751..27112983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.47463.1.S1_x_at6/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.14491.2.S1_x_at4/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45680NANA11+27123274..27126512transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31498.1.S1_at--876--691Chr11:27097027..27097051 (25 bp)
ATGAGAAGCTGCTTTCTCCACTCAA
LOC_Os11g45620
OsAffx.31498.1.S1_at--87--1531Chr11:27096986..27097010 (25 bp)
AGCAGAATCCTGGTGACAGCCCAGA
LOC_Os11g45620
OsAffx.31498.1.S1_at--1151--5051Chr11:27096953..27096977 (25 bp)
GCAGCTCTAGGCTCTAATAGGCTTA
LOC_Os11g45620
OsAffx.31498.1.S1_at--644--911Chr11:27096935..27096959 (25 bp)
AGGCTTATTCCAATATCTGATCTGG
LOC_Os11g45620
OsAffx.31498.1.S1_at--384--5411Chr11:27096813..27096837 (25 bp)
GAAGCTGAACAGATCACCTATTGCA
LOC_Os11g45620
OsAffx.31498.1.S1_at--56--8271Chr11:27096777..27096801 (25 bp)
GGCAGGTCAGCTCTGGAGAAACCCA
LOC_Os11g45620
OsAffx.31498.1.S1_at--202--6531Chr11:27096745..27096769 (25 bp)
GATTTTGGCAAACAACCGCGAACCT
LOC_Os11g45620
OsAffx.31498.1.S1_at--714--4211Chr11:27096730..27096754 (25 bp)
CCGCGAACCTCGATGTGCTGAATAA
LOC_Os11g45620
OsAffx.31498.1.S1_at--636--1171Chr11:27096643..27096667 (25 bp)
AGTACTGTAGCATCTTCCCCAGAAG
LOC_Os11g45620
OsAffx.31498.1.S1_at--939--9571Chr11:27096631..27096655 (25 bp)
TCTTCCCCAGAAGGTATGAGCTTGA
LOC_Os11g45620
OsAffx.31498.1.S1_at--667--3051Chr11:27096599..27096623 (25 bp)
AATCTTGTTCGTATGTGGATAGCGC
LOC_Os11g45620
Target Sequence 
ATGAGAAGCTGCTTTCTCCACTCAATGTTGGGAAGTCAGGAAGCAGAATCCTGGTGACAGCCCAGAGTAAAGAGGCAGCT
CTAGGCTCTAATAGGCTTATTCCAATATCTGATCTGGAAGAGGAGCAATACTTCTCAATGTTCATGCATTATGCACTTGA
CAGTACAATTTTCGATGATCGAGAATACATACCGATTGGGAGGAAAATCGCTAAGAAGCTGAACAGATCACCTATTGCAG
CAGTGACAGTGGCAGGTCAGCTCTGGAGAAACCCAGATATCAGATTTTGGCAAACAACCGCGAACCTCGATGTGCTGAAT
AAGACCAAGGGAGCTCTTTGGTGGAGCTATAATCAACTTGTTGTGGATGTCAGGAGATGCTTCCAGTACTGTAGCATCTT
CCCCAGAAGGTATGAGCTTGAACGTGACAATCTTGTTCGTATGTGGATAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis