Browse Element(s) Details


OsAffx.31549.2.S1_x_at

Description tigr:9635.m00382
TID=OsAffx.31549.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PlCYC4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0451011/11TCP family transcription factor containing protein
LOC_Os02g513104/11TCP family transcription factor containing protein
LOC_Os12g020903/11TCP family transcription factor containing protein
LOC_Os12g421901/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31549.2.S1_x_at--543--3534Chr12:26122701..26122725 (25 bp)
CATCGCGTTCTACGACATCCAGGAC
LOC_Os12g42190
OsAffx.31549.2.S1_x_at--986--9433Chr07:1988540..1988564 (25 bp)
TCGGCGTCGACCAACCAAGCAAGGC
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--506--8472Chr07:1988729..1988753 (25 bp)
TGGCGGCGTCGCCTAGGAAGTCGGG
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--1131--593Chr07:1988839..1988863 (25 bp)
ATGCCGAGGCGCGAGGCGAGCACCT
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--51--895Chr07:1988852..1988876 (25 bp)
AGGCGAGCACCTCGGCGGCGTCGGG
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--666--3991Chr07:1988870..1988894 (25 bp)
CGTCGGGCGGCCAAAGCTGGATCAG
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--70--1633Chr07:1988884..1988908 (25 bp)
AGCTGGATCAGGAAGCCGTCGACGC
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--142--3912Chr07:1988886..1988910 (25 bp)
CTGGATCAGGAAGCCGTCGACGCCG
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--934--4691Chr07:1988918..1988942 (25 bp)
GCGGCTTGTGCTCCGGCACGGGAGA
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--405--9831Chr07:1988978..1989002 (25 bp)
TAAAAGAGGACGAGCTCAAGCATGG
LOC_Os07g04510
OsAffx.31549.2.S1_x_at--623--1871Chr07:1988987..1989011 (25 bp)
ACGAGCTCAAGCATGGCGGCGAGAG
LOC_Os07g04510
Target Sequence 
CATCGCGTTCTACGACATCCAGGACCGCCTCGGCGTCGACCAACCAAGCAAGGCCATCGAGTGGCNCATCCGCGCCGCCG
CNGCCGCCATCGACGCNNTCCNNTCGCTCGACTGCTCNNTCGTCCTCCCCAACGCCGCCCAGCTCCTCACCCGCNGGAGG
CGGAGGCCGTCGAGCNGGCNGCCTTCGNNGGAGCANGCNCGCACGAGGAAGGCTACNNTGGCGGCGTCGCCTAGGAAGTC
GGGGNAGAAGAGGCGGAAGACGAGGTCNNGGTGCGCGGCNCGGAGNGCNNNGCGNANNNNNAAGTTGAGGGCACGGAGGG
AGGGGTGGATGCCGAGGCGCGAGGCGAGCACCTCGGCGGCGTCGGGCGGCCAAAGCTGGATCAGGAAGCCGTCGACGCCG
AGGAGCGGCGGCTTGTGCTCCGGCACGGGAGAAGGAGAGGAAGGTGGCGGCAGGAGCATGGGGGAGATAAAAGAGGACGA
GCTCAAGCATGGCGGCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31549.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis