Browse Element(s) Details


OsAffx.31556.1.S1_at

Description tigr:9640.m00200
TID=OsAffx.31556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02890OsAffx.7466.1.S1_at11/1112+1059932..1060273hypothetical protein
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31556.1.S1_at--1139--6531Chr12:1081069..1081093 (25 bp)
GATTAATTCCAAGCTATTTCGAGTG
LOC_Os12g02920
OsAffx.31556.1.S1_at--485--8551Chr12:1080893..1080917 (25 bp)
TGGAGAGGCTGCTTTCGTACACGGT
LOC_Os12g02920
OsAffx.31556.1.S1_at--346--10291Chr12:1080881..1080905 (25 bp)
TTTCGTACACGGTGGTCGTGCCGAC
LOC_Os12g02920
OsAffx.31556.1.S1_at--972--9411Chr12:1080866..1080890 (25 bp)
TCGTGCCGACCGTGAGCAATAAGGT
LOC_Os12g02920
OsAffx.31556.1.S1_at--505--5071Chr12:1080836..1080860 (25 bp)
GCAGCGAGACGGTGCCTGCACGACA
LOC_Os12g02920
OsAffx.31556.1.S1_at--1082--9171Chr12:1080824..1080848 (25 bp)
TGCCTGCACGACACAAGGAGATCCT
LOC_Os12g02920
OsAffx.31556.1.S1_at--640--8051Chr12:1080808..1080832 (25 bp)
GGAGATCCTGCTCCAAGCTGTCGAC
LOC_Os12g02920
OsAffx.31556.1.S1_at--357--4791Chr12:1080799..1080823 (25 bp)
GCTCCAAGCTGTCGACTCCATCAAG
LOC_Os12g02920
OsAffx.31556.1.S1_at--1140--291Chr12:1080759..1080783 (25 bp)
ATACTAGGGATGGACAAAAAGCTCG
LOC_Os12g02920
OsAffx.31556.1.S1_at--708--9371Chr12:1080707..1080731 (25 bp)
TCGAGCTCGTTAAGCTCGGCTCGGC
LOC_Os12g02920
OsAffx.31556.1.S1_at--657--6851Chr12:1080640..1080664 (25 bp)
GTTTGCAAATCGAGCCAAGCCTGAG
LOC_Os12g02920
Target Sequence 
GATTAATTCCAAGCTATTTCGAGTGGGGTACGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGG
TGAAGAGGCTGGGGAAGGAGGAGGTGGAGAGGCTGCTTTCGTACACGGTGGTCGTGCCGACCGTGAGCAATAAGGTGCTG
GGCAGCGAGACGGTGCCTGCACGACACAAGGAGATCCTGCTCCAAGCTGTCGACTCCATCAAGAACTCTGCTGTCACCAT
ACTAGGGATGGACAAAAAGCTCGGGCTCGTGAGCTCGGCTCGGGCTTGGCTCGAGCTCGTTAAGCTCGGCTCGGCTCGAA
GACTAAACGAGCCGAGCCCGAGCTTCCTCCACAGCTCGTTTGCAAATCGAGCCAAGCCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis