Browse Element(s) Details


Os.24025.1.S1_s_at

Description gb:AK105411.1
DB_XREF= gi:32990620
TID=Os.24025.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G06, full insert sequence.
FL= gb:AK105411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0291011/11Glycosyl transferase family 8 protein, expressed
LOC_Os11g0316011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02870Os.47623.1.A1_at2/1112+1042559..1046052GRAS family transcription factor containing protein, expressed
LOC_Os12g02880OsAffx.19459.1.S1_at9/1112+1051853..1052807hypothetical protein
LOC_Os12g02890OsAffx.7466.1.S1_at11/1112+1059932..1060273hypothetical protein
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24025.1.S1_s_at--1085--9772Chr12:1069467..1069491 (25 bp)
TAAGGGTGGCATGGTGGCACTACAT
LOC_Os12g02910
Os.24025.1.S1_s_at--210--7712Chr12:1069455..1069479 (25 bp)
GGTGGCACTACATTAATTCCAAAAT
LOC_Os12g02910
Os.24025.1.S1_s_at--521--5572Chr12:1069419..1069443 (25 bp)
GAAATGTTTTTGTGCCAGATTTTAA
LOC_Os12g02910
Os.24025.1.S1_s_at--687--2332Chr12:1069375..1069399 (25 bp)
AAAGATGGTAGCAGGCCACCAGCAT
LOC_Os12g02910
Os.24025.1.S1_s_at--52--8452Chr12:1069362..1069386 (25 bp)
GGCCACCAGCATGATACCTTTGAAG
LOC_Os12g02910
Os.24025.1.S1_s_at--298--6492Chr12:1069350..1069374 (25 bp)
GATACCTTTGAAGTAGATCCCTGGT
LOC_Os12g02910
Os.24025.1.S1_s_at--633--1272Chr12:1069336..1069360 (25 bp)
AGATCCCTGGTTAACAATGGTGTAT
LOC_Os12g02910
Os.24025.1.S1_s_at--468--2232Chr12:1069323..1069347 (25 bp)
ACAATGGTGTATGTTGATTCCTTCA
LOC_Os12g02910
Os.24025.1.S1_s_at--287--9632Chr12:1069202..1069226 (25 bp)
TCATGTGTATCTTTGCTCGTTGTAT
LOC_Os12g02910
Os.24025.1.S1_s_at--93--6432Chr12:1069037..1069061 (25 bp)
GATCTTTGCATTTTGTACATCGGAA
LOC_Os12g02910
Os.24025.1.S1_s_at--105--8212Chr12:1069016..1069040 (25 bp)
GGAAGGATTCTTGTATCATCAGTTT
LOC_Os12g02910
Target Sequence 
TAAGGGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGGATGAAATGTTTTTGTGCCAGATTTTAAGCAATAC
TTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCTTTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTG
ATTCCTTCACCTGTTACACGATTTGGATGGATNTTCTTCACATTTNCCACTTTGGGATTGCAAAAGAGCAGTTCCCTGGT
GGTTATTTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGTATAACTTGAGTGTTCAC
TAGCATGGCATGTANAGATGTAGAATGCCTCAACCCGCAAGTATTGGGTGATTCTTTCTTTCTTCTTCAAGGCCTATGTA
CCATGTCACACCAATGTCTAAGTTTTGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24025.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis